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Maintainer: [email protected] Log URL: https://pkg-status.freebsd.org/beefy24/data/main-amd64-default/pc7c8dab6ae32_sefdb824139/logs/cytoscape-3.6.1_2.log Build URL: https://pkg-status.freebsd.org/beefy24/build.html?mastername=main-amd64-default&build=pc7c8dab6ae32_sefdb824139 Log: =>> Building biology/cytoscape build started at Fri Aug 14 17:52:50 UTC 2026 port directory: /usr/ports/biology/cytoscape package name: cytoscape-3.6.1_2 building for: FreeBSD main-amd64-default-job-35 16.0-CURRENT FreeBSD 16.0-CURRENT 1600020 amd64 maintained by: [email protected] Makefile datestamp: -rw-r--r-- 1 root wheel 2741 Apr 4 01:01 /usr/ports/biology/cytoscape/Makefile Ports top last git commit: c7c8dab6ae323568bab55907b11c2cef4f885055 Ports top unclean checkout: no Port dir last git commit: 86813e9ccf597695e26c8104e678f913689f1e93 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.8 Host OSVERSION: 1600019 Jail OSVERSION: 1600020 Job Id: 35 !!! Jail is newer than host. (Jail: 1600020, Host: 1600019) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh OSVERSION=1600020 UNAME_v=FreeBSD 16.0-CURRENT 1600020 UNAME_r=16.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.8 MASTERMNT=/usr/local/poudriere/data/.m/main-amd64-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/main-amd64-default/35/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=main-amd64-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/main-amd64-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.8 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- [email protected] --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/cytoscape/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/cytoscape/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/cytoscape/work/.cache HOME=/wrkdirs/usr/ports/biology/cytoscape/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/cytoscape/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/cytoscape/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- JAVA_HOME=/usr/local/openjdk8 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/cytoscape/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/cytoscape/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/cytoscape/work/.cache HOME=/wrkdirs/usr/ports/biology/cytoscape/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/cytoscape/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/cytoscape/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="i nstall -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" OSREL=16.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/cytoscape" EXAMPLESDIR="share/examples/cytoscape" DATADIR="share/cytoscape" WWWDIR="www/cytoscape" ETCDIR="etc/cytoscape" --End PLIST_SUB-- --SUB_LIST-- JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" JAVA_VERSION="8" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/cytoscape DOCSDIR=/usr/local/share/doc/cytoscape EXAMPLESDIR=/usr/local/share/examples/cytoscape WWWDIR=/usr/local/www/cytoscape ETCDIR=/usr/local/etc/cytoscape --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (kbytes, -y) unlimited virtual machines (-V) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License LGPL21 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> cytoscape-3.6.1_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.8.4.pkg [main-amd64-default-job-35] Installing pkg-2.8.4... [main-amd64-default-job-35] Extracting pkg-2.8.4: .......... done ===> cytoscape-3.6.1_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of cytoscape-3.6.1_2 =========================================================================== =======================<phase: fetch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: fetch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by cytoscape-3.6.1_2 for building =========================================================================== =======================<phase: checksum >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by cytoscape-3.6.1_2 for building => SHA256 Checksum OK for FreeBSD-cytoscape-3.6.1-maven-repository.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-parent-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-api-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-impl-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-support-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-gui-distribution-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-app-template-3.6.1_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: extract >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by cytoscape-3.6.1_2 for building ===> Extracting for cytoscape-3.6.1_2 => SHA256 Checksum OK for FreeBSD-cytoscape-3.6.1-maven-repository.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-parent-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-api-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-impl-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-support-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-gui-distribution-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-app-template-3.6.1_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: patch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for cytoscape-3.6.1_2 =========================================================================== =======================<phase: build-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> cytoscape-3.6.1_2 depends on package: maven363>0 - not found <snip> [[1;34mINFO[m] [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.4:install[m [1m(default-install)[m @ [36mcytoscape[0;1m ---[m [[1;34mINFO[m] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/cytoscape/3.6.1/cytoscape-3.6.1.pom [[1;34mINFO[m] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/cytoscape-unix-3.6.1.tar.gz to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/cytoscape/3.6.1/cytoscape-3.6.1.tar.gz [[1;34mINFO[m] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/cytoscape-windows-3.6.1.zip to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/cytoscape/3.6.1/cytoscape-3.6.1.zip [[1;34mINFO[m] [[1;34mINFO[m] [1m---------------< [0;36morg.cytoscape.app-developer:cytoscape[0;1m >----------------[m [[1;34mINFO[m] [1mBuilding Distribution 3.6.1 [115/117][m [[1;34mINFO[m] [1m--------------------------------[ pom ]---------------------------------[m [[1;34mINFO[m] [[1;34mINFO[m] [1m--- [0;32mmaven-dependency-plugin:2.2:unpack[m [1m(unpack-cytoscape)[m @ [36mcytoscape[0;1m ---[m [[1;34mINFO[m] Configured Artifact: org.cytoscape.distribution:cytoscape:3.6.1:tar.gz [[1;34mINFO[m] Unpacking /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/cytoscape-unix-3.6.1.tar.gz to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/app-developer/target/tmp with includes and excludes [[1;34mINFO[m] Expanding: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/cytoscape-unix-3.6.1.tar.gz into /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/app-developer/target/tmp [[1;34mINFO[m] [[1;34mINFO[m] [1m--- [0;32mmaven-dependency-plugin:2.2:unpack[m [1m(unpack-javadoc)[m @ [36mcytoscape[0;1m ---[m [[1;34mINFO[m] Configured Artifact: org.cytoscape:swing-app-api:javadoc:3.6.1:jar [[1;34mINFO[m] Unpacking /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/swing-app-api-3.6.1-javadoc.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/app-developer/target/API with includes and excludes [[1;34mINFO[m] [[1;34mINFO[m] [1m--- [0;32mmaven-dependency-plugin:2.2:copy[m [1m(copy)[m @ [36mcytoscape[0;1m ---[m [[1;34mINFO[m] Configured Artifact: org.cytoscape:swing-app-api:jar-with-dependencies:3.6.1:jar [[1;34mINFO[m] Configured Artifact: org.cytoscape:api-parent:sources:3.6.1:jar [[1;34mINFO[m] Configured Artifact: org.cytoscape:impl-parent:sources:3.6.1:jar [[1;34mINFO[m] Copying swing-app-api-3.6.1-jar-with-dependencies.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/app-developer/target/lib/cytoscape-swing-app-api-3.6.1.jar [[1;34mINFO[m] Copying api-parent-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/app-developer/target/lib/api-3.6.1-sources.jar [[1;34mINFO[m] Copying impl-parent-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/app-developer/target/lib/impl-3.6.1-sources.jar [[1;34mINFO[m] [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:2.5:copy-resources[m [1m(copy-unzipped-dir)[m @ [36mcytoscape[0;1m ---[m [debug] execute contextualize [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources. [[1;34mINFO[m] Copying 241 resources [[1;34mINFO[m] [[1;34mINFO[m] [1m--- [0;32mmaven-antrun-plugin:1.6:run[m [1m(fix-permissions)[m @ [36mcytoscape[0;1m ---[m [[1;33mWARNING[m] Parameter tasks is deprecated, use target instead [[1;34mINFO[m] Executing tasks main: [[1;34mINFO[m] Executed tasks [[1;34mINFO[m] [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:2.4:jar[m [1m(attach-sources)[0;1m > [0;1mgenerate-sources[m @ [36mcytoscape[0;1m >>>[m [[1;34mINFO[m] [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:2.4:jar[m [1m(attach-sources)[0;1m < [0;1mgenerate-sources[m @ [36mcytoscape[0;1m <<<[m [[1;34mINFO[m] [[1;34mINFO[m] [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:2.4:jar[m [1m(attach-sources)[m @ [36mcytoscape[0;1m ---[m [[1;34mINFO[m] [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:2.4.1:clean[m [1m(clean-temporary-directory)[m @ [36mcytoscape[0;1m ---[m [[1;34mINFO[m] Deleting /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/app-developer/target/tmp (includes = [], excludes = []) [[1;34mINFO[m] Deleting /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/app-developer/target/dependency-maven-plugin-markers (includes = [], excludes = []) [[1;34mINFO[m] Deleting /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/app-developer/target/antrun (includes = [], excludes = []) [[1;34mINFO[m] [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.4:install[m [1m(default-install)[m @ [36mcytoscape[0;1m ---[m [[1;34mINFO[m] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/app-developer/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/app-developer/cytoscape/3.6.1/cytoscape-3.6.1.pom [[1;34mINFO[m] [[1;34mINFO[m] [1m-----------------------< [0;36morg.cytoscape:project[0;1m >------------------------[m [[1;34mINFO[m] [1mBuilding Cytoscape Project POM 3.6.1 [116/117][m [[1;34mINFO[m] [1m--------------------------------[ pom ]---------------------------------[m [[1;34mINFO[m] [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.4:install[m [1m(default-install)[m @ [36mproject[0;1m ---[m [[1;34mINFO[m] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/project/3.6.1/project-3.6.1.pom [[1;34mINFO[m] [1m------------------------------------------------------------------------[m [[1;34mINFO[m] [1mReactor Summary for Cytoscape Project POM 3.6.1:[m [[1;34mINFO[m] [[1;34mINFO[m] Basic Cytoscape POM Configuration .................. [1;32mSUCCESS[m [ 2.337 s] [[1;34mINFO[m] Cytoscape API Parent Project POM ................... [1;32mSUCCESS[m [ 5.356 s] [[1;34mINFO[m] Cytoscape Documentation Taglets .................... [1;32mSUCCESS[m [ 3.158 s] [[1;34mINFO[m] Cytoscape Event API (event-api) .................... [1;32mSUCCESS[m [ 2.474 s] [[1;34mINFO[m] Cytoscape Model API (model-api) .................... [1;32mSUCCESS[m [ 1.608 s] [[1;34mINFO[m] Cytoscape Service API (service-api) ................ [1;32mSUCCESS[m [ 0.934 s] [[1;34mINFO[m] Cytoscape View Model API (viewmodel-api) ........... [1;32mSUCCESS[m [ 0.663 s] [[1;34mINFO[m] Cytoscape CI API (ci-api) .......................... [1;32mSUCCESS[m [ 0.377 s] [[1;34mINFO[m] Cytoscape Work API (work-api) ...................... [1;32mSUCCESS[m [ 0.722 s] [[1;34mINFO[m] Cytoscape Presentation API (presentation-api) ...... [1;32mSUCCESS[m [ 0.838 s] [[1;34mINFO[m] Cytoscape Application API (application-api) ........ [1;32mSUCCESS[m [ 0.353 s] [[1;34mINFO[m] Cytoscape Property API (property-api) .............. [1;32mSUCCESS[m [ 0.422 s] [[1;34mINFO[m] Cytoscape VizMap API (vizmap-api) .................. [1;32mSUCCESS[m [ 0.433 s] [[1;34mINFO[m] Cytoscape Session API (session-api) ................ [1;32mSUCCESS[m [ 0.392 s] [[1;34mINFO[m] Cytoscape Filter API (filter-api) .................. [1;32mSUCCESS[m [ 0.470 s] [[1;34mINFO[m] Cytoscape IO API (io-api) .......................... [1;32mSUCCESS[m [ 0.525 s] [[1;34mINFO[m] Cytoscape Core Task API (core-task-api) ............ [1;32mSUCCESS[m [ 0.421 s] [[1;34mINFO[m] Cytoscape Equations API (equations-api) ............ [1;32mSUCCESS[m [ 0.470 s] [[1;34mINFO[m] Cytoscape Layout API (layout-api) .................. [1;32mSUCCESS[m [ 0.674 s] [[1;34mINFO[m] Cytoscape Groups API (group-api) ................... [1;32mSUCCESS[m [ 0.332 s] [[1;34mINFO[m] Cytoscape Groups API (jobs-api) .................... [1;32mSUCCESS[m [ 0.670 s] [[1;34mINFO[m] Cytoscape Webservice API (webservice-api) .......... [1;32mSUCCESS[m [ 0.317 s] [[1;34mINFO[m] Cytoscape Data Source API (datasource-api) ......... [1;32mSUCCESS[m [ 0.308 s] [[1;34mINFO[m] Cytoscape Command Executor API (command-executor-api) [1;32mSUCCESS[m [ 0.268 s] [[1;34mINFO[m] Cytoscape App API (app-api) ........................ [1;32mSUCCESS[m [ 1.812 s] [[1;34mINFO[m] Cytoscape Work Swing API (work-swing-api) .......... [1;32mSUCCESS[m [ 1.682 s] [[1;34mINFO[m] Cytoscape Swing Application API (swing-application-api) [1;32mSUCCESS[m [ 0.361 s] [[1;34mINFO[m] Cytoscape VizMap GUI API (vizmap-gui-api) .......... [1;32mSUCCESS[m [ 0.264 s] [[1;34mINFO[m] Cytoscape Swing Utility API (swing-util-api) ....... [1;32mSUCCESS[m [ 0.632 s] [[1;34mINFO[m] Cytoscape Webservice Swing API (webservice-swing-api) [1;32mSUCCESS[m [ 0.244 s] [[1;34mINFO[m] Cytoscape Swing App API (swing-app-api) ............ [1;32mSUCCESS[m [ 39.868 s] [[1;34mINFO[m] Cytoscape Util API (util-api) ...................... [1;32mSUCCESS[m [ 0.331 s] [[1;34mINFO[m] Cytoscape API (api-bundle) ......................... [1;32mSUCCESS[m [ 1.497 s] [[1;34mINFO[m] Cytoscape Implementation Parent Project POM ........ [1;32mSUCCESS[m [ 1.281 s] [[1;34mINFO[m] Cytoscape Equations Impl (equations-impl) .......... [1;32mSUCCESS[m [ 0.889 s] [[1;34mINFO[m] Cytoscape Model Impl Parent (model-impl-parent) .... [1;32mSUCCESS[m [ 1.215 s] [[1;34mINFO[m] Cytoscape Model Impl (model-impl) .................. [1;32mSUCCESS[m [ 1.207 s] [[1;34mINFO[m] Cytoscape Command Executor Impl (command-executor-impl) [1;32mSUCCESS[m [ 0.751 s] [[1;34mINFO[m] Cytoscape Ding Impl Parent (ding-impl) ............. [1;32mSUCCESS[m [ 1.208 s] [[1;34mINFO[m] Cytoscape Ding View/Presentation Impl (ding-presentation-impl) [1;32mSUCCESS[m [ 4.738 s] [[1;34mINFO[m] Cytoscape View Model Impl Parent (viewmodel-impl-parent) [1;32mSUCCESS[m [ 1.211 s] [[1;34mINFO[m] Cytoscape View Model Impl (viewmodel-impl) ......... [1;32mSUCCESS[m [ 0.394 s] [[1;34mINFO[m] Cytoscape Groups Impl (group-impl) ................. [1;32mSUCCESS[m [ 0.704 s] [[1;34mINFO[m] Cytoscape Event Impl Parent (event-impl-parent) .... [1;32mSUCCESS[m [ 1.153 s] [[1;34mINFO[m] Cytoscape Event Impl (event-impl) .................. [1;32mSUCCESS[m [ 0.283 s] [[1;34mINFO[m] Cytoscape Filters Impl (filter-impl) ............... [1;32mSUCCESS[m [ 0.906 s] [[1;34mINFO[m] Cytoscape Filters 2 Impl (filter2-impl) ............ [1;32mSUCCESS[m [ 1.641 s] [[1;34mINFO[m] Cytoscape IO Impl Parent (io-impl-parent) .......... [1;32mSUCCESS[m [ 1.199 s] [[1;34mINFO[m] Cytoscape IO Impl (io-impl) ........................ [1;32mSUCCESS[m [ 2.007 s] [[1;34mINFO[m] Cytoscape Layout Impl (layout-impl) ................ [1;32mSUCCESS[m [ 0.356 s] [[1;34mINFO[m] Cytoscape Ding View/Presentation Impl Performance (ding-impl-performance-debug) [1;32mSUCCESS[m [ 5.848 s] [[1;34mINFO[m] Cytoscape Editor Impl (editor-impl) ................ [1;32mSUCCESS[m [ 0.462 s] [[1;34mINFO[m] Cytoscape Equation Functions Impl (equations-functions-impl) [1;32mSUCCESS[m [ 0.414 s] [[1;34mINFO[m] Cytoscape GraphML Impl (graphml-impl) .............. [1;32mSUCCESS[m [ 0.468 s] [[1;34mINFO[m] Cytoscape IO Impl Performance (io-impl-performance) [1;32mSUCCESS[m [ 3.998 s] [[1;34mINFO[m] Cytoscape Jobs Impl (jobs-impl) .................... [1;32mSUCCESS[m [ 0.371 s] [[1;34mINFO[m] Cytoscape Layout Algorithms Impl (layout-cytoscape-impl) [1;32mSUCCESS[m [ 1.099 s] [[1;34mINFO[m] Cytoscape JGraph Layout Impl (layout-jgraph-impl) .. [1;32mSUCCESS[m [ 0.283 s] [[1;34mINFO[m] Cytoscape Prefuse Layout Impl (layout-prefuse-impl) [1;32mSUCCESS[m [ 0.285 s] [[1;34mINFO[m] Cytoscape Linkout Impl (linkout-impl) .............. [1;32mSUCCESS[m [ 0.309 s] [[1;34mINFO[m] Cytoscape Log Swing Impl (log-swing-impl) .......... [1;32mSUCCESS[m [ 0.322 s] [[1;34mINFO[m] Cytoscape Manual Layout Impl (manual-layout-impl) .. [1;32mSUCCESS[m [ 0.399 s] [[1;34mINFO[m] Cytoscape Model Impl Performance Debug (model-impl-performance-debug) [1;32mSUCCESS[m [ 2.111 s] [[1;34mINFO[m] Cytoscape Model Impl Table Performance Debug (model-impl-table-performance-debug) [1;32mSUCCESS[m [ 1.573 s] [[1;34mINFO[m] Cytoscape App Impl (app-impl) ...................... [1;32mSUCCESS[m [ 0.921 s] [[1;34mINFO[m] Cytoscape Presentation Impl (presentation-impl) .... [1;32mSUCCESS[m [ 0.262 s] [[1;34mINFO[m] Cytoscape Property Impl (property-impl) ............ [1;32mSUCCESS[m [ 0.259 s] [[1;34mINFO[m] Cytoscape Search Impl (search-impl) ................ [1;32mSUCCESS[m [ 0.323 s] [[1;34mINFO[m] Cytoscape Session Impl (session-impl) .............. [1;32mSUCCESS[m [ 0.279 s] [[1;34mINFO[m] Cytoscape Swing Utility Impl (swing-util-impl) ..... [1;32mSUCCESS[m [ 0.282 s] [[1;34mINFO[m] Cytoscape Swing Application Impl (swing-application-impl) [1;32mSUCCESS[m [ 2.003 s] [[1;34mINFO[m] Cytoscape Table Browser Impl (table-browser-impl) .. [1;32mSUCCESS[m [ 0.681 s] [[1;34mINFO[m] Cytoscape Table Import Impl (table-import-impl) .... [1;32mSUCCESS[m [ 3.537 s] [[1;34mINFO[m] Cytoscape VizMap GUI Core Impl (vizmap-gui-core-impl) [1;32mSUCCESS[m [ 0.241 s] [[1;34mINFO[m] Cytoscape VizMap GUI Impl (vizmap-gui-impl) ........ [1;32mSUCCESS[m [ 1.580 s] [[1;34mINFO[m] Cytoscape VizMap Impl Parent (vizmap-impl-parent) .. [1;32mSUCCESS[m [ 1.067 s] [[1;34mINFO[m] Cytoscape VizMap Impl (vizmap-impl) ................ [1;32mSUCCESS[m [ 0.402 s] [[1;34mINFO[m] Cytoscape Webservice Impl (webservice-impl) ........ [1;32mSUCCESS[m [ 0.316 s] [[1;34mINFO[m] org.cytoscape.work-headless-impl ................... [1;32mSUCCESS[m [ 0.215 s] [[1;34mINFO[m] org.cytoscape.work-impl ............................ [1;32mSUCCESS[m [ 0.250 s] [[1;34mINFO[m] Cytoscape Work Swing Impl Parent (work-swing-impl-parent) [1;32mSUCCESS[m [ 1.075 s] [[1;34mINFO[m] Cytoscape Work Swing Impl (work-swing-impl) ........ [1;32mSUCCESS[m [ 0.524 s] [[1;34mINFO[m] Cytoscape Application Impl (application-impl) ...... [1;32mSUCCESS[m [ 0.399 s] [[1;34mINFO[m] Cytoscape Datasource Impl (datasource-impl) ........ [1;32mSUCCESS[m [ 0.267 s] [[1;34mINFO[m] Cytoscape Support Parent Project POM ............... [1;32mSUCCESS[m [ 0.006 s] [[1;34mINFO[m] Cytoscape Launch Framework ......................... [1;32mSUCCESS[m [ 0.006 s] [[1;34mINFO[m] CommandLine Provider ............................... [1;32mSUCCESS[m [ 0.092 s] [[1;34mINFO[m] Cytoscape GUI Command Line Parser Impl (gui-cmdline-parser-impl) [1;32mSUCCESS[m [ 0.279 s] [[1;34mINFO[m] Cytoscape Edge Bundler Impl (edge-bundler-impl) .... [1;32mSUCCESS[m [ 0.281 s] [[1;34mINFO[m] Cytoscape Scripting Impl (scripting-impl) .......... [1;32mSUCCESS[m [ 0.340 s] [[1;34mINFO[m] Cytoscape Core Task Impl (core-task-impl) .......... [1;32mSUCCESS[m [ 1.701 s] [[1;34mINFO[m] Cytoscape Headless Application Impl (headless-application-impl) [1;32mSUCCESS[m [ 0.219 s] [[1;34mINFO[m] org.cytoscape.cy-commons-cli ....................... [1;32mSUCCESS[m [ 0.188 s] [[1;34mINFO[m] Cytoscape Headless Command Line Parser Impl (headless-cmdline-parser-impl) [1;32mSUCCESS[m [ 0.261 s] [[1;34mINFO[m] Cytoscape 3 App Archetypes Parent .................. [1;32mSUCCESS[m [ 0.136 s] [[1;34mINFO[m] Cytoscape 3 Archetype - Creates an App providing public API [1;32mSUCCESS[m [ 0.264 s] [[1;34mINFO[m] Cytoscape 3 Archetype - Creates an App with a Task . [1;32mSUCCESS[m [ 0.026 s] [[1;34mINFO[m] Cytoscape 3 Archetype - Creates a CyAction (menu item) for desktop application [1;32mSUCCESS[m [ 0.085 s] [[1;34mINFO[m] Cytoscape 3 Archetype - Creates a Meta-App to install multiple related apps [1;32mSUCCESS[m [ 0.019 s] [[1;34mINFO[m] org.cytoscape.integration-test-support ............. [1;32mSUCCESS[m [ 0.173 s] [[1;34mINFO[m] Launcher ........................................... [1;31mFAILURE[m [ 0.503 s] [[1;34mINFO[m] StartLevel Assembly ................................ [1;32mSUCCESS[m [ 0.028 s] [[1;34mINFO[m] Tasks for Testing .................................. [1;32mSUCCESS[m [ 0.192 s] [[1;34mINFO[m] Cytoscape Desktop Application Distribution ......... [1;32mSUCCESS[m [ 0.005 s] [[1;34mINFO[m] Cytoscape Third-Party Dependencies (third-party) ... [1;32mSUCCESS[m [ 22.449 s] [[1;34mINFO[m] SplashScreen Launcher .............................. [1;33mSKIPPED[m [[1;34mINFO[m] Cytoscape Launcher ................................. [1;32mSUCCESS[m [ 0.162 s] [[1;34mINFO[m] Splash Updater ..................................... [1;32mSUCCESS[m [ 0.100 s] [[1;34mINFO[m] Cytoscape Command Line Provider Implementation ..... [1;32mSUCCESS[m [ 0.084 s] [[1;34mINFO[m] Cytoscape Diagnostics .............................. [1;32mSUCCESS[m [ 0.136 s] [[1;34mINFO[m] Cytoscape Branding ................................. [1;32mSUCCESS[m [ 0.135 s] [[1;34mINFO[m] Cytoscape Application Implementation Metadata ...... [1;32mSUCCESS[m [ 0.070 s] [[1;34mINFO[m] Cytoscape GUI-Distribution Integration Test (integration-test) [1;32mSUCCESS[m [ 0.313 s] [[1;34mINFO[m] Cytoscape Feature Repository ....................... [1;32mSUCCESS[m [ 0.029 s] [[1;34mINFO[m] Cytoscape Karaf Distribution ....................... [1;32mSUCCESS[m [ 13.453 s] [[1;34mINFO[m] Distribution ....................................... [1;32mSUCCESS[m [ 4.511 s] [[1;34mINFO[m] Cytoscape Project POM .............................. [1;32mSUCCESS[m [ 0.022 s] [[1;34mINFO[m] [1m------------------------------------------------------------------------[m [[1;34mINFO[m] [1;31mBUILD FAILURE[m [[1;34mINFO[m] [1m------------------------------------------------------------------------[m [[1;34mINFO[m] Total time: 02:55 min [[1;34mINFO[m] Finished at: 2026-08-14T17:56:20Z [[1;34mINFO[m] [1m------------------------------------------------------------------------[m [[1;31mERROR[m] Failed to execute goal [32morg.apache.maven.plugins:maven-assembly-plugin:2.2-beta-5:single[m [1m(make-assembly)[m on project [36mlauncher[m: [1;31mFailed to create assembly: Error creating assembly archive jar-with-dependencies: Failed to retrieve numeric file attributes using: '/bin/sh -c ls -1nlaR /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/launcher/target/classes'[m -> [1m[Help 1][m [[1;31mERROR[m] [[1;31mERROR[m] To see the full stack trace of the errors, re-run Maven with the [1m-e[m switch. [[1;31mERROR[m] Re-run Maven using the [1m-X[m switch to enable full debug logging. [[1;31mERROR[m] [[1;31mERROR[m] For more information about the errors and possible solutions, please read the following articles: [[1;31mERROR[m] [1m[Help 1][m http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException [[1;31mERROR[m] [[1;31mERROR[m] After correcting the problems, you can resume the build with the command [[1;31mERROR[m] [1mmvn <args> -rf :launcher[m *** Error code 1 Stop. make: stopped making "build" in /usr/ports/biology/cytoscape
