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Maintainer: [email protected] Log URL: https://pkg-status.freebsd.org/beefy24/data/main-amd64-default/pc15851b5d6fc_s7dc4284615/logs/hdf5-21-2.1.1.log Build URL: https://pkg-status.freebsd.org/beefy24/build.html?mastername=main-amd64-default&build=pc15851b5d6fc_s7dc4284615 Log: =>> Building science/hdf5-21 build started at Sat Aug 29 04:40:11 UTC 2026 port directory: /usr/ports/science/hdf5-21 package name: hdf5-21-2.1.1 building for: FreeBSD main-amd64-default-job-26 16.0-CURRENT FreeBSD 16.0-CURRENT 1600021 amd64 maintained by: [email protected] Makefile datestamp: -rw-r--r-- 1 root wheel 1736 Apr 23 01:01 /usr/ports/science/hdf5-21/Makefile Ports top last git commit: c15851b5d6fc3781f592602edc35589c21774938 Ports top unclean checkout: no Port dir last git commit: 168e0746c977d4bbf81a0d1bd6577092e8bab518 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.8-2-g2e891d4a Host OSVERSION: 1600019 Jail OSVERSION: 1600021 Job Id: 26 !!! Jail is newer than host. (Jail: 1600021, Host: 1600019) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh OSVERSION=1600021 UNAME_v=FreeBSD 16.0-CURRENT 1600021 UNAME_r=16.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.8-2-g2e891d4a MASTERMNT=/usr/local/poudriere/data/.m/main-amd64-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/main-amd64-default/26/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=main-amd64-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/main-amd64-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.8-2-g2e891d4a SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for hdf5-21-2.1.1: FORTRAN=on: Fortran language support SZIP=off: Szip compression support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- [email protected] --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PKG_CONFIG=pkgconf F77="gfortran14" F90="gfortran14" FC="gfortran14" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc14" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc14" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc14" XDG_DATA_HOME=/wrkdirs/usr/ports/science/hdf5-21/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/hdf5-21/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/hdf5-21/work/.cache HOME=/wrkdirs/usr/ports/science/hdf5-21/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/hdf5-21/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/hdf5-21/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran14" F90="gfortran14" FC="gfortran14" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc14" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc14" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc14" XDG_DATA_HOME=/wrkdirs/usr/ports/science/hdf5-21/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/hdf5-21/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/hdf5-21/work/.cache HOME=/wrkdirs/usr/ports/science/hdf5-21/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/hdf5-21/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/hdf5-21/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/ local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" STRIP="/usr/local/bin/strip" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc14 -L/usr/local/lib/gcc14 " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- FORTRAN="" CMAKE_BUILD_TYPE="release" OSREL=16.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/hdf5" EXAMPLESDIR="share/examples/hdf5-21" DATADIR="share/hdf5" WWWDIR="www/hdf5" ETCDIR="etc/hdf5" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/hdf5 DOCSDIR=/usr/local/share/doc/hdf5 EXAMPLESDIR=/usr/local/share/examples/hdf5-21 WWWDIR=/usr/local/www/hdf5 ETCDIR=/usr/local/etc/hdf5 --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (kbytes, -y) unlimited virtual machines (-V) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD4CLAUSE accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> hdf5-21-2.1.1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.8.4.pkg [main-amd64-default-job-26] Installing pkg-2.8.4... [main-amd64-default-job-26] Extracting pkg-2.8.4: .......... done ===> hdf5-21-2.1.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of hdf5-21-2.1.1 =========================================================================== =======================<phase: fetch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: fetch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD4CLAUSE accepted by the user ===> Fetching all distfiles required by hdf5-21-2.1.1 for building =========================================================================== =======================<phase: checksum >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD4CLAUSE accepted by the user ===> Fetching all distfiles required by hdf5-21-2.1.1 for building => SHA256 Checksum OK for HDFGroup-hdf5-2.1.1_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: extract >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD4CLAUSE accepted by the user ===> Fetching all distfiles required by hdf5-21-2.1.1 for building ===> Extracting for hdf5-21-2.1.1 => SHA256 Checksum OK for HDFGroup-hdf5-2.1.1_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: patch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for hdf5-21-2.1.1 ===> Applying FreeBSD patches for hdf5-21-2.1.1 from /usr/ports/science/hdf5-21/files =========================================================================== =======================<phase: build-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> hdf5-21-2.1.1 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.31.12_3.pkg [main-amd64-default-job-26] Installing cmake-core-3.31.12_3... [main-amd64-default-job-26] `-- Installing expat-2.8.3... [main-amd64-default-job-26] `-- Extracting expat-2.8.3: .......... done [main-amd64-default-job-26] `-- Installing jsoncpp-1.9.6_1... [main-amd64-default-job-26] `-- Extracting jsoncpp-1.9.6_1: .......... done [main-amd64-default-job-26] `-- Installing libidn2-2.3.8... [main-amd64-default-job-26] | `-- Installing indexinfo-0.3.1_1... [main-amd64-default-job-26] | `-- Extracting indexinfo-0.3.1_1: .... done <snip> -- Check size of int16_t - done -- Check size of uint16_t -- Check size of uint16_t - done -- Check size of int_least16_t -- Check size of int_least16_t - done -- Check size of uint_least16_t -- Check size of uint_least16_t - done -- Check size of int_fast16_t -- Check size of int_fast16_t - done -- Check size of uint_fast16_t -- Check size of uint_fast16_t - done -- Check size of int32_t -- Check size of int32_t - done -- Check size of uint32_t -- Check size of uint32_t - done -- Check size of int_least32_t -- Check size of int_least32_t - done -- Check size of uint_least32_t -- Check size of uint_least32_t - done -- Check size of int_fast32_t -- Check size of int_fast32_t - done -- Check size of uint_fast32_t -- Check size of uint_fast32_t - done -- Check size of int64_t -- Check size of int64_t - done -- Check size of uint64_t -- Check size of uint64_t - done -- Check size of int_least64_t -- Check size of int_least64_t - done -- Check size of uint_least64_t -- Check size of uint_least64_t - done -- Check size of int_fast64_t -- Check size of int_fast64_t - done -- Check size of uint_fast64_t -- Check size of uint_fast64_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of ssize_t -- Check size of ssize_t - done -- Check size of ptrdiff_t -- Check size of ptrdiff_t - done -- Check size of off_t -- Check size of off_t - done -- Check size of time_t -- Check size of time_t - done -- Check size of _Bool -- Check size of _Bool - done -- Looking for CLOCK_MONOTONIC -- Looking for CLOCK_MONOTONIC - not found -- Performing Test H5_HAVE_TM_GMTOFF -- Performing Test H5_HAVE_TM_GMTOFF - Success -- Performing Test H5_HAVE___TM_GMTOFF -- Performing Test H5_HAVE___TM_GMTOFF - Failed -- Performing Test H5_HAVE_STRUCT_TIMEZONE -- Performing Test H5_HAVE_STRUCT_TIMEZONE - Failed -- Looking for gettimeofday -- Looking for gettimeofday - found -- Performing Test H5_HAVE_STAT_ST_BLOCKS -- Performing Test H5_HAVE_STAT_ST_BLOCKS - Success -- Looking for ioctl -- Looking for ioctl - found -- Performing Test H5_HAVE_STRUCT_VIDEOCONFIG -- Performing Test H5_HAVE_STRUCT_VIDEOCONFIG - Failed -- Performing Test H5_HAVE_STRUCT_TEXT_INFO -- Performing Test H5_HAVE_STRUCT_TEXT_INFO - Failed -- Looking for _getvideoconfig -- Looking for _getvideoconfig - not found -- Looking for gettextinfo -- Looking for gettextinfo - not found -- Looking for _scrsize -- Looking for _scrsize - not found -- Looking for GetConsoleScreenBufferInfo -- Looking for GetConsoleScreenBufferInfo - not found -- Looking for TIOCGWINSZ -- Looking for TIOCGWINSZ - found -- Looking for TIOCGETD -- Looking for TIOCGETD - found -- Looking for alarm -- Looking for alarm - found -- Looking for fcntl -- Looking for fcntl - found -- Looking for flock -- Looking for flock - found -- Looking for fork -- Looking for fork - found -- Looking for gethostname -- Looking for gethostname - found -- Looking for getrusage -- Looking for getrusage - found -- Looking for pread -- Looking for pread - found -- Looking for pwrite -- Looking for pwrite - found -- Looking for strcasestr -- Looking for strcasestr - found -- Looking for strdup -- Looking for strdup - found -- Looking for symlink -- Looking for symlink - found -- Looking for tmpfile -- Looking for tmpfile - found -- Looking for asprintf -- Looking for asprintf - found -- Looking for vasprintf -- Looking for vasprintf - found -- Looking for waitpid -- Looking for waitpid - found -- Looking for qsort_r -- Looking for qsort_r - found -- Looking for qsort_s -- Looking for qsort_s - found -- Looking for sigsetjmp -- Looking for sigsetjmp - found -- Looking for clock_gettime -- Looking for clock_gettime - found -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for clock_gettime in posix4 -- Looking for clock_gettime in posix4 - not found -- Testing maximum decimal precision for C - 21;0 -- maximum decimal precision for C var - 21 -- Checking if complex number support is available -- Looking for complex.h -- Looking for complex.h - found -- Check size of float _Complex -- Check size of float _Complex - done -- Check size of double _Complex -- Check size of double _Complex - done -- Check size of long double _Complex -- Check size of long double _Complex - done -- Using C99 complex number types -- Checking if _Float16 support is available -- Check size of _Float16 -- Check size of _Float16 - done -- Looking for FLT16_EPSILON -- Looking for FLT16_EPSILON - not found -- Looking for FLT16_MIN -- Looking for FLT16_MIN - not found -- Looking for FLT16_MAX -- Looking for FLT16_MAX - not found -- Looking for FLT16_MIN_10_EXP -- Looking for FLT16_MIN_10_EXP - not found -- Looking for FLT16_MAX_10_EXP -- Looking for FLT16_MAX_10_EXP - not found -- Looking for FLT16_MANT_DIG -- Looking for FLT16_MANT_DIG - not found -- _Float16 support has been disabled since the required macros (FLT16_MAX, FLT16_EPSILON, etc. were not found) -- Found PkgConfig: /usr/bin/pkgconf (found version "2.9.93") -- Could NOT find Perl (missing: PERL_EXECUTABLE) -- ....All Warnings are enabled -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Found Threads: TRUE -- Looking for stdatomic.h -- Looking for stdatomic.h - found -- The Fortran compiler identification is unknown ld-elf.so.1: Shared object "libmpc.so.3" not found, required by "cc1" -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - failed -- Check for working Fortran compiler: /usr/local/bin/gfortran14 -- Check for working Fortran compiler: /usr/local/bin/gfortran14 - broken CMake Error at /usr/local/share/cmake/Modules/CMakeTestFortranCompiler.cmake:59 (message): The Fortran compiler "/usr/local/bin/gfortran14" is not able to compile a simple test program. It fails with the following output: Change Dir: '/wrkdirs/usr/ports/science/hdf5-21/work/.build/CMakeFiles/CMakeScratch/TryCompile-6cE6SF' Run Build Command(s): /usr/local/bin/cmake -E env VERBOSE=1 /usr/bin/make -f Makefile cmTC_92829/fast /usr/bin/make -f CMakeFiles/cmTC_92829.dir/build.make CMakeFiles/cmTC_92829.dir/build Building Fortran object CMakeFiles/cmTC_92829.dir/testFortranCompiler.f.o /usr/local/bin/gfortran14 -O -Wl,-rpath=/usr/local/lib/gcc14 -fPIE -c /wrkdirs/usr/ports/science/hdf5-21/work/.build/CMakeFiles/CMakeScratch/TryCompile-6cE6SF/testFortranCompiler.f -o CMakeFiles/cmTC_92829.dir/testFortranCompiler.f.o ld-elf.so.1: Shared object "libmpc.so.3" not found, required by "f951" *** Error code 1 Stop. make[1]: stopped making "CMakeFiles/cmTC_92829.dir/build" in /wrkdirs/usr/ports/science/hdf5-21/work/.build/CMakeFiles/CMakeScratch/TryCompile-6cE6SF *** Error code 1 Stop. make: stopped making "cmTC_92829/fast" in /wrkdirs/usr/ports/science/hdf5-21/work/.build/CMakeFiles/CMakeScratch/TryCompile-6cE6SF CMake will not be able to correctly generate this project. Call Stack (most recent call first): fortran/CMakeLists.txt:2 (project) -- Configuring incomplete, errors occurred! *** Error code 1 Stop. make: stopped making "configure" in /usr/ports/science/hdf5-21
