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Maintainer: [email protected] Log URL: https://pkg-status.freebsd.org/beefy18/data/144i386-default/08bf8552608d/logs/seqwish-0.7.12.log Build URL: https://pkg-status.freebsd.org/beefy18/build.html?mastername=144i386-default&build=08bf8552608d Log: =>> Building biology/seqwish build started at Sun Sep 13 11:00:27 UTC 2026 port directory: /usr/ports/biology/seqwish package name: seqwish-0.7.12 building for: FreeBSD 144i386-default-job-01 14.4-RELEASE-p9 FreeBSD 14.4-RELEASE-p9 i386 maintained by: [email protected] Makefile datestamp: -rw-r--r-- 1 root wheel 646 Sep 12 01:01 /usr/ports/biology/seqwish/Makefile Ports top last git commit: 08bf8552608d33a4ffd8818cf846d5dbb12c64f9 Ports top unclean checkout: no Port dir last git commit: 90eedca667726630830532c8ba007b1fde3a71c0 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.8-2-g2e891d4a Host OSVERSION: 1600022 Jail OSVERSION: 1404000 Job Id: 01 ---Begin Environment--- SHELL=/bin/sh BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 OSVERSION=1404000 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 UNAME_m=i386 UNAME_p=i386 UNAME_r=14.4-RELEASE-p9 LOCALBASE=/usr/local UNAME_v=FreeBSD 14.4-RELEASE-p9 USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.8-2-g2e891d4a MASTERMNT=/usr/local/poudriere/data/.m/144i386-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/144i386-default/01/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=144i386-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/144i386-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.8-2-g2e891d4a SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- [email protected] --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seqwish/work/.cache HOME=/wrkdirs/usr/ports/biology/seqwish/work TMPDIR="/wrkdirs/usr/ports/biology/seqwish/work" PATH=/wrkdirs/usr/ports/biology/seqwish/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seqwish/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seqwish/work/.cache HOME=/wrkdirs/usr/ports/biology/seqwish/work TMPDIR="/wrkdirs/usr/ports/biology/seqwish/work" PATH=/wrkdirs/usr/ports/biology/seqwish/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seqwish/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=14.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/seqwish" EXAMPLESDIR="share/examples/seqwish" DATADIR="share/seqwish" WWWDIR="www/seqwish" ETCDIR="etc/seqwish" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/seqwish DOCSDIR=/usr/local/share/doc/seqwish EXAMPLESDIR=/usr/local/share/examples/seqwish WWWDIR=/usr/local/www/seqwish ETCDIR=/usr/local/etc/seqwish --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> seqwish-0.7.12 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.8.4.pkg [144i386-default-job-01] Installing pkg-2.8.4... [144i386-default-job-01] Extracting pkg-2.8.4: .......... done ===> seqwish-0.7.12 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of seqwish-0.7.12 =========================================================================== =======================<phase: fetch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: fetch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user => seqwish-v0.7.12.tar.gz doesn't seem to exist in /portdistfiles. => Attempting to fetch https://github.com/pangenome/seqwish/releases/download/v0.7.12/seqwish-v0.7.12.tar.gz seqwish-v0.7.12.tar.gz 19 MB 66 MBps 00s => rust/crates/arbitrary-chunks-0.4.1.crate doesn't seem to exist in /portdistfiles. => Attempting to fetch https://static.crates.io/crates/arbitrary-chunks/arbitrary-chunks-0.4.1.crate?dummy=/rust/crates/arbitrary-chunks-0.4.1.crate rust/crates/arbitrary-chunks-0.4.1.crate 8209 B 58 MBps 00s => rust/crates/block-pseudorand-0.1.2.crate doesn't seem to exist in /portdistfiles. => Attempting to fetch https://static.crates.io/crates/block-pseudorand/block-pseudorand-0.1.2.crate?dummy=/rust/crates/block-pseudorand-0.1.2.crate rust/crates/block-pseudorand-0.1.2.crate 6912 B 55 MBps 00s => rust/crates/chiapos-chacha8-0.1.0.crate doesn't seem to exist in /portdistfiles. => Attempting to fetch https://static.crates.io/crates/chiapos-chacha8/chiapos-chacha8-0.1.0.crate?dummy=/rust/crates/chiapos-chacha8-0.1.0.crate rust/crates/chiapos-chacha8-0.1.0.crate 7246 B 65 MBps 00s => rust/crates/clap-4.6.4.crate doesn't seem to exist in /portdistfiles. => Attempting to fetch https://static.crates.io/crates/clap/clap-4.6.4.crate?dummy=/rust/crates/clap-4.6.4.crate rust/crates/clap-4.6.4.crate 62 kB 903 kBps 00s => rust/crates/clap_builder-4.6.2.crate doesn't seem to exist in /portdistfiles. => Attempting to fetch https://static.crates.io/crates/clap_builder/clap_builder-4.6.2.crate?dummy=/rust/crates/clap_builder-4.6.2.crate rust/crates/clap_builder-4.6.2.crate 166 kB 1219 kBps 00s => rust/crates/fm-index-0.3.1.crate doesn't seem to exist in /portdistfiles. => Attempting to fetch https://static.crates.io/crates/fm-index/fm-index-0.3.1.crate?dummy=/rust/crates/fm-index-0.3.1.crate rust/crates/fm-index-0.3.1.crate 35 kB 533 kBps 00s => rust/crates/iitree-rs-0.1.1.crate doesn't seem to exist in /portdistfiles. => Attempting to fetch https://static.crates.io/crates/iitree-rs/iitree-rs-0.1.1.crate?dummy=/rust/crates/iitree-rs-0.1.1.crate rust/crates/iitree-rs-0.1.1.crate 10 kB 21 MBps 00s => rust/crates/nanorand-0.6.1.crate doesn't seem to exist in /portdistfiles. => Attempting to fetch https://static.crates.io/crates/nanorand/nanorand-0.6.1.crate?dummy=/rust/crates/nanorand-0.6.1.crate rust/crates/nanorand-0.6.1.crate 10 kB 63 MBps 00s => rust/crates/partition-0.1.2.crate doesn't seem to exist in /portdistfiles. => Attempting to fetch https://static.crates.io/crates/partition/partition-0.1.2.crate?dummy=/rust/crates/partition-0.1.2.crate rust/crates/partition-0.1.2.crate 8400 B 56 MBps 00s => rust/crates/portable-atomic-1.14.0.crate doesn't seem to exist in /portdistfiles. => Attempting to fetch https://static.crates.io/crates/portable-atomic/portable-atomic-1.14.0.crate?dummy=/rust/crates/portable-atomic-1.14.0.crate rust/crates/portable-atomic-1.14.0.crate 195 kB 950 kBps 00s => rust/crates/rdst-0.20.14.crate doesn't seem to exist in /portdistfiles. => Attempting to fetch https://static.crates.io/crates/rdst/rdst-0.20.14.crate?dummy=/rust/crates/rdst-0.20.14.crate rust/crates/rdst-0.20.14.crate 37 kB 549 kBps 00s => rust/crates/regex-automata-0.4.16.crate doesn't seem to exist in /portdistfiles. => Attempting to fetch https://static.crates.io/crates/regex-automata/regex-automata-0.4.16.crate?dummy=/rust/crates/regex-automata-0.4.16.crate rust/crates/regex-automata-0.4.16.crate 612 kB 2180 kBps 00s => rust/crates/sucds-0.8.3.crate doesn't seem to exist in /portdistfiles. => Attempting to fetch https://static.crates.io/crates/sucds/sucds-0.8.3.crate?dummy=/rust/crates/sucds-0.8.3.crate rust/crates/sucds-0.8.3.crate 43 kB 644 kBps 00s => rust/crates/uf_rush-0.1.1.crate doesn't seem to exist in /portdistfiles. => Attempting to fetch https://static.crates.io/crates/uf_rush/uf_rush-0.1.1.crate?dummy=/rust/crates/uf_rush-0.1.1.crate rust/crates/uf_rush-0.1.1.crate 6752 B 52 MBps 00s => rust/crates/vers-vecs-1.10.1.crate doesn't seem to exist in /portdistfiles. => Attempting to fetch https://static.crates.io/crates/vers-vecs/vers-vecs-1.10.1.crate?dummy=/rust/crates/vers-vecs-1.10.1.crate rust/crates/vers-vecs-1.10.1.crate 106 kB 764 kBps 00s <snip> | +++ warning: hiding a lifetime that's elided elsewhere is confusing --> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/bitvec-1.1.1/src/slice/api.rs:1805:24 | 1805 | pub fn rsplitn_mut<F>(&mut self, n: usize, pred: F) -> RSplitNMut<T, O, F> | ^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here | | | the lifetime is elided here | = help: the same lifetime is referred to in inconsistent ways, making the signature confusing help: use `'_` for type paths | 1805 | pub fn rsplitn_mut<F>(&mut self, n: usize, pred: F) -> RSplitNMut<'_, T, O, F> | +++ warning: hiding a lifetime that's elided elsewhere is confusing --> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/bitvec-1.1.1/src/vec/api.rs:736:18 | 736 | pub fn drain<R>(&mut self, range: R) -> Drain<T, O> | ^^^^^^^^^ ^^^^^^^^^^^ the same lifetime is hidden here | | | the lifetime is elided here | = help: the same lifetime is referred to in inconsistent ways, making the signature confusing help: use `'_` for type paths | 736 | pub fn drain<R>(&mut self, range: R) -> Drain<'_, T, O> | +++ warning: hiding a lifetime that's elided elsewhere is confusing --> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/bitvec-1.1.1/src/vec/api.rs:1021:3 | 1021 | &mut self, | ^^^^^^^^^ the lifetime is elided here ... 1024 | ) -> Splice<T, O, I::IntoIter> | ^^^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here | = help: the same lifetime is referred to in inconsistent ways, making the signature confusing help: use `'_` for type paths | 1024 | ) -> Splice<'_, T, O, I::IntoIter> | +++ warning: `vers-vecs` (lib) generated 1 warning Running `CARGO=/usr/local/bin/cargo CARGO_CRATE_NAME=portable_atomic CARGO_MANIFEST_DIR=/wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/portable-atomic-1.14.0 CARGO_MANIFEST_PATH=/wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/portable-atomic-1.14.0/Cargo.toml CARGO_PKG_AUTHORS='' CARGO_PKG_DESCRIPTION='Portable atomic types including support for 128-bit atomics, atomic float, etc. ' CARGO_PKG_HOMEPAGE='' CARGO_PKG_LICENSE='Apache-2.0 OR MIT' CARGO_PKG_LICENSE_FILE='' CARGO_PKG_NAME=portable-atomic CARGO_PKG_README=README.md CARGO_PKG_REPOSITORY='https://github.com/taiki-e/portable-atomic' CARGO_PKG_RUST_VERSION=1.34 CARGO_PKG_VERSION=1.14.0 CARGO_PKG_VERSION_MAJOR=1 CARGO_PKG_VERSION_MINOR=14 CARGO_PKG_VERSION_PATCH=0 CARGO_PKG_VERSION_PRE='' LD_LIBRARY_PATH=/wrkdirs/usr/ports/biology/seqwish/work/target/release/deps OUT_DIR=/wrkdirs/usr/ports/biology/seqwish/work/target/release/build/portable-atomic-0f458f7e5cd179cd/out /usr/local/bin/rustc --crate-name portable_atomic --edition=2018 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/portable-atomic-1.14.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=2 -C panic=abort -C codegen-units=1 '--warn=clippy::unused_trait_names' --warn=unreachable_pub --warn=unnameable_types --warn=unexpected_cf gs '--warn=clippy::undocumented_unsafe_blocks' '--warn=clippy::transmute_undefined_repr' '--warn=clippy::trailing_empty_array' --warn=single_use_lifetimes --warn=rust_2018_idioms '--warn=clippy::pedantic' --warn=non_ascii_idents '--warn=clippy::inline_asm_x86_att_syntax' --warn=improper_ctypes_definitions --warn=improper_ctypes --warn=deprecated_safe '--warn=clippy::default_union_representation' '--warn=clippy::as_underscore' '--warn=clippy::as_ptr_cast_mut' '--warn=clippy::all' '--allow=clippy::type_complexity' '--allow=clippy::too_many_lines' '--allow=clippy::too_many_arguments' '--allow=clippy::struct_field_names' '--allow=clippy::struct_excessive_bools' '--allow=clippy::single_match_else' '--allow=clippy::single_match' '--allow=clippy::similar_names' '--allow=clippy::range_plus_one' '--allow=clippy::nonminimal_bool' '--allow=clippy::naive_bytecount' '--allow=clippy::module_name_repetitions' '--allow=clippy::missing_errors_doc' '--allow=clippy::manual_range_contains' '--a llow=clippy::manual_assert' '--allow=clippy::incompatible_msrv' '--allow=clippy::float_cmp' '--allow=clippy::doc_markdown' '--allow=clippy::declare_interior_mutable_const' '--allow=clippy::collapsible_match' '--allow=clippy::cast_lossless' '--allow=clippy::borrow_as_ptr' '--allow=clippy::bool_assert_comparison' --check-cfg 'cfg(target_arch,values("xtensa"))' --check-cfg 'cfg(target_arch,values("amdgpu"))' --check-cfg 'cfg(target_arch,values("loongarch32"))' --check-cfg 'cfg(target_os,values("trusty"))' --check-cfg 'cfg(target_os,values("psx"))' --check-cfg 'cfg(target_env,values("psx"))' --check-cfg 'cfg(target_feature,values("lse2","lse128","rcpc3"))' --check-cfg 'cfg(target_feature,values("quadword-atomics"))' --check-cfg 'cfg(target_feature,values("zaamo","zabha"))' --check-cfg 'cfg(target_feature,values("zacas"))' --check-cfg 'cfg(target_feature,values("ztso"))' --check-cfg 'cfg(target_feature,values("miscellaneous-extensions-3"))' --check-cfg 'cfg(target_pointer_width,v alues("128"))' --check-cfg 'cfg(portable_atomic_no_outline_atomics,portable_atomic_outline_atomics,portable_atomic_unstable_f16,portable_atomic_unstable_f128)' --check-cfg 'cfg(portable_atomic_test_detect_false,portable_atomic_test_no_std_static_assert_ffi,qemu,valgrind,valgrind_cross)' --cfg 'feature="default"' --cfg 'feature="fallback"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("critical-section", "default", "disable-fiq", "fallback", "float", "force-amo", "require-cas", "s-mode", "serde", "std", "unsafe-assume-privileged", "unsafe-assume-single-core"))' -C metadata=be054fcc92720805 -C extra-filename=-e9cd0995a1a19746 --out-dir /wrkdirs/usr/ports/biology/seqwish/work/target/release/deps -C strip=symbols -L dependency=/wrkdirs/usr/ports/biology/seqwish/work/target/release/deps --cap-lints warn -C linker=cc --check-cfg 'cfg(target_feature,values("lsfe","fast-serialization","load-store-on-cond","distinct-ops","rmw"))' --check-cfg 'cfg(portable_atomic_ato mic_intrinsics,portable_atomic_disable_fiq,portable_atomic_force_amo,portable_atomic_ll_sc_rmw,portable_atomic_no_asm,portable_atomic_no_asm_maybe_uninit,portable_atomic_no_asm_syscall,portable_atomic_no_atomic_64,portable_atomic_no_atomic_cas,portable_atomic_no_atomic_load_store,portable_atomic_no_atomic_min_max,portable_atomic_no_cfg_target_has_atomic,portable_atomic_no_cmpxchg16b_intrinsic,portable_atomic_no_cmpxchg16b_target_feature,portable_atomic_no_const_mut_refs,portable_atomic_no_const_raw_ptr_deref,portable_atomic_no_const_transmute,portable_atomic_no_core_unwind_safe,portable_atomic_no_diagnostic_namespace,portable_atomic_no_strict_provenance,portable_atomic_no_strict_provenance_atomic_ptr,portable_atomic_no_stronger_failure_ordering,portable_atomic_no_track_caller,portable_atomic_no_unsafe_op_in_unsafe_fn,portable_atomic_pre_llvm_16,portable_atomic_pre_llvm_18,portable_atomic_pre_llvm_20,portable_atomic_s_mode,portable_atomic_sanitize_thread,portable_atomic_targe t_feature,portable_atomic_unsafe_assume_privileged,portable_atomic_unsafe_assume_single_core,portable_atomic_unstable_asm,portable_atomic_unstable_asm_experimental_arch,portable_atomic_unstable_cfg_target_has_atomic,portable_atomic_unstable_isa_attribute)' --check-cfg 'cfg(portable_atomic_target_feature,values("cmpxchg16b","distinct-ops","fast-serialization","load-store-on-cond","lse","lse128","lse2","lsfe","mclass","miscellaneous-extensions-3","quadword-atomics","rcpc3","rmw","v6","v7","zaamo","zabha","zacas"))'` Running `CARGO=/usr/local/bin/cargo CARGO_CRATE_NAME=clap CARGO_MANIFEST_DIR=/wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/clap-4.6.4 CARGO_MANIFEST_PATH=/wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/clap-4.6.4/Cargo.toml CARGO_PKG_AUTHORS='' CARGO_PKG_DESCRIPTION='A simple to use, efficient, and full-featured Command Line Argument Parser' CARGO_PKG_HOMEPAGE='' CARGO_PKG_LICENSE='MIT OR Apache-2.0' CARGO_PKG_LICENSE_FILE='' CARGO_PKG_NAME=clap CARGO_PKG_README=README.md CARGO_PKG_REPOSITORY='https://github.com/clap-rs/clap' CARGO_PKG_RUST_VERSION=1.85 CARGO_PKG_VERSION=4.6.4 CARGO_PKG_VERSION_MAJOR=4 CARGO_PKG_VERSION_MINOR=6 CARGO_PKG_VERSION_PATCH=4 CARGO_PKG_VERSION_PRE='' LD_LIBRARY_PATH=/wrkdirs/usr/ports/biology/seqwish/work/target/release/deps /usr/local/bin/rustc --crate-name clap --edition=2024 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/clap-4.6.4/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,a rtifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=2 -C panic=abort -C codegen-units=1 --warn=rust_2018_idioms '--warn=clippy::zero_sized_map_values' '--warn=clippy::verbose_file_reads' --warn=unused_qualifications --warn=unused_macro_rules --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn --warn=unreachable_pub --allow=unnameable_types '--warn=clippy::uninlined_format_args' '--warn=clippy::trait_duplication_in_bounds' '--warn=clippy::todo' '--warn=clippy::string_lit_as_bytes' '--warn=clippy::string_add_assign' '--warn=clippy::string_add' '--warn=clippy::str_to_string' '--warn=clippy::semicolon_if_nothing_returned' '--warn=clippy::self_named_module_files' '--warn=clippy::same_functions_in_if_condition' '--allow=clippy::result_large_err' '--warn=clippy::rest_pat_in_fully_bound_structs' '--warn=clippy::ref_option_ref' '--warn=clippy::redundant_feature_names' '--warn=clippy::rc_mutex' '--warn=clippy::ptr_as_ptr' '--warn=clippy::path_buf_pus h_overwrite' '--warn=clippy::negative_feature_names' '--warn=clippy::needless_for_each' '--allow=clippy::needless_continue' '--warn=clippy::mutex_integer' '--allow=clippy::multiple_bound_locations' '--warn=clippy::mem_forget' '--warn=clippy::macro_use_imports' '--warn=clippy::lossy_float_literal' '--warn=clippy::linkedlist' '--allow=clippy::let_and_return' '--warn=clippy::large_types_passed_by_value' '--warn=clippy::large_stack_arrays' '--warn=clippy::large_digit_groups' '--warn=clippy::invalid_upcast_comparisons' '--warn=clippy::infinite_loop' '--warn=clippy::inefficient_to_string' '--warn=clippy::inconsistent_struct_constructor' '--warn=clippy::imprecise_flops' '--warn=clippy::implicit_clone' '--allow=clippy::if_same_then_else' '--warn=clippy::from_iter_instead_of_collect' '--warn=clippy::fn_params_excessive_bools' '--warn=clippy::float_cmp_const' '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::fallible_impl_from' '--warn=clippy::explicit_ into_iter_loop' '--warn=clippy::explicit_deref_methods' '--warn=clippy::expl_impl_clone_on_copy' '--warn=clippy::enum_glob_use' '--warn=clippy::empty_enums' '--warn=clippy::doc_markdown' '--warn=clippy::debug_assert_with_mut_call' '--warn=clippy::dbg_macro' '--warn=clippy::create_dir' '--allow=clippy::collapsible_else_if' '--warn=clippy::checked_conversions' '--allow=clippy::branches_sharing_code' '--allow=clippy::bool_assert_comparison' '--allow=clippy::blocks_in_conditions' '--allow=clippy::assigning_clones' --cfg 'feature="color"' --cfg 'feature="default"' --cfg 'feature="derive"' --cfg 'feature="error-context"' --cfg 'feature="help"' --cfg 'feature="std"' --cfg 'feature="suggestions"' --cfg 'feature="usage"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("cargo", "color", "debug", "default", "deprecated", "derive", "env", "error-context", "help", "std", "string", "suggestions", "unicode", "unstable-derive-ui-tests", "unstable-doc", "unstable-ext", "unsta ble-markdown", "unstable-styles", "unstable-v5", "usage", "wrap_help"))' -C metadata=ee57b4350e1b5d8a -C extra-filename=-cc5550baad2b7461 --out-dir /wrkdirs/usr/ports/biology/seqwish/work/target/release/deps -C strip=symbols -L dependency=/wrkdirs/usr/ports/biology/seqwish/work/target/release/deps --extern clap_builder=/wrkdirs/usr/ports/biology/seqwish/work/target/release/deps/libclap_builder-493b8f7698cd6a6c.rmeta --extern clap_derive=/wrkdirs/usr/ports/biology/seqwish/work/target/release/deps/libclap_derive-19339fce63488d74.so --cap-lints warn -C linker=cc` Running `CARGO=/usr/local/bin/cargo CARGO_CFG_FEATURE='' CARGO_CFG_PANIC=unwind CARGO_CFG_TARGET_ABI='' CARGO_CFG_TARGET_ARCH=x86 CARGO_CFG_TARGET_ENDIAN=little CARGO_CFG_TARGET_ENV='' CARGO_CFG_TARGET_FAMILY=unix CARGO_CFG_TARGET_FEATURE=fxsr,sse,sse2 CARGO_CFG_TARGET_HAS_ATOMIC=16,32,64,8,ptr CARGO_CFG_TARGET_HAS_ATOMIC_PRIMITIVE_ALIGNMENT=16,32,8,ptr CARGO_CFG_TARGET_OS=freebsd CARGO_CFG_TARGET_POINTER_WIDTH=32 CARGO_CFG_TARGET_VENDOR=unknown CARGO_CFG_UNIX='' CARGO_ENCODED_RUSTFLAGS='-Clinker=cc' CARGO_MANIFEST_DIR=/wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12 CARGO_MANIFEST_PATH=/wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/Cargo.toml CARGO_PKG_AUTHORS='Erik Garrison <[email protected]>:Andrea Guarracino <[email protected]>' CARGO_PKG_DESCRIPTION='A variation graph inducer - build pangenome graphs from pairwise alignments' CARGO_PKG_HOMEPAGE='' CARGO_PKG_LICENSE=MIT CARGO_PKG_LICENSE_FILE='' CARGO_PKG_NAME=seqwish CARGO_PKG_README=README. md CARGO_PKG_REPOSITORY='https://github.com/pangenome/seqwish' CARGO_PKG_RUST_VERSION=1.70 CARGO_PKG_VERSION=0.7.12 CARGO_PKG_VERSION_MAJOR=0 CARGO_PKG_VERSION_MINOR=7 CARGO_PKG_VERSION_PATCH=12 CARGO_PKG_VERSION_PRE='' DEBUG=false HOST=i686-unknown-freebsd LD_LIBRARY_PATH='/wrkdirs/usr/ports/biology/seqwish/work/target/release:/wrkdirs/usr/ports/biology/seqwish/work/target/release/deps:/usr/local/lib/rustlib/i686-unknown-freebsd/lib' NUM_JOBS=3 OPT_LEVEL=2 OUT_DIR=/wrkdirs/usr/ports/biology/seqwish/work/target/release/build/seqwish-bd719dac4c515201/out PROFILE=release RUSTC=/usr/local/bin/rustc RUSTDOC=/usr/local/bin/rustdoc TARGET=i686-unknown-freebsd /wrkdirs/usr/ports/biology/seqwish/work/target/release/build/seqwish-87f596a3a396ea27/build-script-build` Compiling sucds v0.8.3 Running `CARGO=/usr/local/bin/cargo CARGO_CRATE_NAME=sucds CARGO_MANIFEST_DIR=/wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3 CARGO_MANIFEST_PATH=/wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/Cargo.toml CARGO_PKG_AUTHORS='Shunsuke Kanda (kampersanda) <[email protected]>' CARGO_PKG_DESCRIPTION='Succinct data structures in Rust' CARGO_PKG_HOMEPAGE='https://github.com/kampersanda/sucds' CARGO_PKG_LICENSE='MIT OR Apache-2.0' CARGO_PKG_LICENSE_FILE='' CARGO_PKG_NAME=sucds CARGO_PKG_README=README.md CARGO_PKG_REPOSITORY='https://github.com/kampersanda/sucds' CARGO_PKG_RUST_VERSION=1.61.0 CARGO_PKG_VERSION=0.8.3 CARGO_PKG_VERSION_MAJOR=0 CARGO_PKG_VERSION_MINOR=8 CARGO_PKG_VERSION_PATCH=3 CARGO_PKG_VERSION_PRE='' LD_LIBRARY_PATH=/wrkdirs/usr/ports/biology/seqwish/work/target/release/deps /usr/local/bin/rustc --crate-name sucds --edition=2018 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/lib .rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=2 -C panic=abort -C codegen-units=1 --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "intrinsics", "std"))' -C metadata=fe10c699da55b6d8 -C extra-filename=-1937f26b59ab3ad6 --out-dir /wrkdirs/usr/ports/biology/seqwish/work/target/release/deps -C strip=symbols -L dependency=/wrkdirs/usr/ports/biology/seqwish/work/target/release/deps --extern anyhow=/wrkdirs/usr/ports/biology/seqwish/work/target/release/deps/libanyhow-106d16ee4e4303d6.rmeta --extern num_traits=/wrkdirs/usr/ports/biology/seqwish/work/target/release/deps/libnum_traits-9b200446b07a8516.rmeta --cap-lints warn -C linker=cc` error: `target_pointer_width` must be 64 --> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/lib.rs:51:1 | 51 | compile_error!("`target_pointer_width` must be 64"); | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ error[E0432]: unresolved import `darray` --> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/bit_vectors.rs:93:9 | 93 | pub use darray::DArray; | ^^^^^^ use of unresolved module or unlinked crate `darray` | help: to make use of source file /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/bit_vectors/darray.rs, use `mod darray` in this file to declare the module --> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/lib.rs:50:1 | 50 + mod darray; | error[E0432]: unresolved import `rank9sel` --> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/bit_vectors.rs:94:9 | 94 | pub use rank9sel::Rank9Sel; | ^^^^^^^^ use of unresolved module or unlinked crate `rank9sel` | help: to make use of source file /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/bit_vectors/rank9sel.rs, use `mod rank9sel` in this file to declare the module --> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/lib.rs:50:1 | 50 + mod rank9sel; | error[E0432]: unresolved import `sarray` --> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/bit_vectors.rs:95:9 | 95 | pub use sarray::SArray; | ^^^^^^ use of unresolved module or unlinked crate `sarray` | help: to make use of source file /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/bit_vectors/sarray.rs, use `mod sarray` in this file to declare the module --> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/lib.rs:50:1 | 50 + mod sarray; | error[E0432]: unresolved import `wavelet_matrix` --> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/char_sequences.rs:37:9 | 37 | pub use wavelet_matrix::WaveletMatrix; | ^^^^^^^^^^^^^^ use of unresolved module or unlinked crate `wavelet_matrix` | help: to make use of source file /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/char_sequences/wavelet_matrix.rs, use `mod wavelet_matrix` in this file to declare the module --> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/lib.rs:50:1 | 50 + mod wavelet_matrix; | error[E0432]: unresolved import `compact_vector` --> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/int_vectors.rs:86:9 | 86 | pub use compact_vector::CompactVector; | ^^^^^^^^^^^^^^ use of unresolved module or unlinked crate `compact_vector` | help: to make use of source file /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/int_vectors/compact_vector.rs, use `mod compact_vector` in this file to declare the module --> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/lib.rs:50:1 | 50 + mod compact_vector; | error[E0432]: unresolved import `dacs_byte` --> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/int_vectors.rs:87:9 | 87 | pub use dacs_byte::DacsByte; | ^^^^^^^^^ use of unresolved module or unlinked crate `dacs_byte` | help: to make use of source file /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/int_vectors/dacs_byte.rs, use `mod dacs_byte` in this file to declare the module --> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/lib.rs:50:1 | 50 + mod dacs_byte; | error[E0432]: unresolved import `dacs_opt` --> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/int_vectors.rs:88:9 | 88 | pub use dacs_opt::DacsOpt; | ^^^^^^^^ use of unresolved module or unlinked crate `dacs_opt` | help: to make use of source file /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/int_vectors/dacs_opt.rs, use `mod dacs_opt` in this file to declare the module --> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/lib.rs:50:1 | 50 + mod dacs_opt; | error[E0432]: unresolved import `prefix_summed_elias_fano` --> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/int_vectors.rs:89:9 | 89 | pub use prefix_summed_elias_fano::PrefixSummedEliasFano; | ^^^^^^^^^^^^^^^^^^^^^^^^ use of unresolved module or unlinked crate `prefix_summed_elias_fano` | help: to make use of source file /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/int_vectors/prefix_summed_elias_fano.rs, use `mod prefix_summed_elias_fano` in this file to declare the module --> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/lib.rs:50:1 | 50 + mod prefix_summed_elias_fano; | error[E0432]: unresolved import `elias_fano` --> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/mii_sequences.rs:36:9 | 36 | pub use elias_fano::EliasFano; | ^^^^^^^^^^ use of unresolved module or unlinked crate `elias_fano` | help: to make use of source file /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/mii_sequences/elias_fano.rs, use `mod elias_fano` in this file to declare the module --> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/lib.rs:50:1 | 50 + mod elias_fano; | error[E0432]: unresolved import `elias_fano` --> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/mii_sequences.rs:37:9 | 37 | pub use elias_fano::EliasFanoBuilder; | ^^^^^^^^^^ use of unresolved module or unlinked crate `elias_fano` | help: to make use of source file /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/mii_sequences/elias_fano.rs, use `mod elias_fano` in this file to declare the module --> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/lib.rs:50:1 | 50 + mod elias_fano; | error[E0432]: unresolved import `serial` --> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/lib.rs:62:9 | 62 | pub use serial::Serializable; | ^^^^^^ use of unresolved module or unlinked crate `serial` | help: to make use of source file /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/serial.rs, use `mod serial` in this file to declare the module | 50 + mod serial; | For more information about this error, try `rustc --explain E0432`. error: could not compile `sucds` (lib) due to 12 previous errors Caused by: process didn't exit successfully: `CARGO=/usr/local/bin/cargo CARGO_CRATE_NAME=sucds CARGO_MANIFEST_DIR=/wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3 CARGO_MANIFEST_PATH=/wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/Cargo.toml CARGO_PKG_AUTHORS='Shunsuke Kanda (kampersanda) <[email protected]>' CARGO_PKG_DESCRIPTION='Succinct data structures in Rust' CARGO_PKG_HOMEPAGE='https://github.com/kampersanda/sucds' CARGO_PKG_LICENSE='MIT OR Apache-2.0' CARGO_PKG_LICENSE_FILE='' CARGO_PKG_NAME=sucds CARGO_PKG_README=README.md CARGO_PKG_REPOSITORY='https://github.com/kampersanda/sucds' CARGO_PKG_RUST_VERSION=1.61.0 CARGO_PKG_VERSION=0.8.3 CARGO_PKG_VERSION_MAJOR=0 CARGO_PKG_VERSION_MINOR=8 CARGO_PKG_VERSION_PATCH=3 CARGO_PKG_VERSION_PRE='' LD_LIBRARY_PATH=/wrkdirs/usr/ports/biology/seqwish/work/target/release/deps /usr/local/bin/rustc --crate-name sucds --edition=2018 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/ven dor/sucds-0.8.3/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=2 -C panic=abort -C codegen-units=1 --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "intrinsics", "std"))' -C metadata=fe10c699da55b6d8 -C extra-filename=-1937f26b59ab3ad6 --out-dir /wrkdirs/usr/ports/biology/seqwish/work/target/release/deps -C strip=symbols -L dependency=/wrkdirs/usr/ports/biology/seqwish/work/target/release/deps --extern anyhow=/wrkdirs/usr/ports/biology/seqwish/work/target/release/deps/libanyhow-106d16ee4e4303d6.rmeta --extern num_traits=/wrkdirs/usr/ports/biology/seqwish/work/target/release/deps/libnum_traits-9b200446b07a8516.rmeta --cap-lints warn -C linker=cc` (exit status: 1) warning: build failed, waiting for other jobs to finish... warning: `bitvec` (lib) generated 298 warnings *** Error code 101 Stop. make: stopped making "build" in /usr/ports/biology/seqwish
