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Maintainer: w...@freebsd.org Last committer: ger...@freebsd.org Ident: $FreeBSD: head/science/R-cran-bayesm/Makefile 367888 2014-09-10 20:50:31Z gerald $ Log URL: http://beefy6.nyi.freebsd.org/data/101amd64-default/415869/logs/R-cran-bayesm-2.2.5_2.log Build URL: http://beefy6.nyi.freebsd.org/build.html?mastername=101amd64-default&build=415869 Log: ====>> Building science/R-cran-bayesm build started at Thu May 26 03:18:05 UTC 2016 port directory: /usr/ports/science/R-cran-bayesm building for: FreeBSD 101amd64-default-job-21 10.1-RELEASE-p34 FreeBSD 10.1-RELEASE-p34 amd64 maintained by: w...@freebsd.org Makefile ident: $FreeBSD: head/science/R-cran-bayesm/Makefile 367888 2014-09-10 20:50:31Z gerald $ Poudriere version: 3.1.12 Host OSVERSION: 1100109 Jail OSVERSION: 1001000 ---Begin Environment--- SHELL=/bin/csh UNAME_v=FreeBSD 10.1-RELEASE-p34 UNAME_r=10.1-RELEASE-p34 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 OPSYS=FreeBSD ARCH=amd64 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/101amd64-default/ref UID=0 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ POUDRIERE_BUILD_TYPE=bulk PKGNAME=R-cran-bayesm-2.2.5_2 OSREL=10.1 _OSRELEASE=10.1-RELEASE-p34 PYTHONBASE=/usr/local OLDPWD=/ _SMP_CPUS=24 PWD=/usr/local/poudriere/data/.m/101amd64-default/ref/.p/pool HAVE_COMPAT_IA32_KERN=YES LINUX_OSRELEASE=2.6.32 MASTERNAME=101amd64-default SCRIPTPREFIX=/usr/local/share/poudriere _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun USER=root HOME=/root POUDRIERE_VERSION=3.1.12 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh CONFIGURE_MAX_CMD_LEN=262144 LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes _JAVA_OS_LIST_REGEXP=native\|linux OSVERSION=1001000 ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/R-cran-bayesm/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/R-cran-bayesm/work HOME=/wrkdirs/usr/ports/science/R-cran-bayesm/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/R-cran-bayesm/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/R-cran-bayesm/work HOME=/wrkdirs/usr/ports/science/R-cran-bayesm/work TMPDIR="/tmp" NO_PIE=yes WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- R_MOD_DIR=lib/R/library/bayesm OSREL=10.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/bayesm" EXAMPLESDIR="share/examples/bayesm" DATADIR="share/bayesm" WWWDIR="www/bayesm" ETCDIR="etc/bayesm" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/bayesm DOCSDIR=/usr/local/share/doc/bayesm EXAMPLESDIR=/usr/local/share/examples/bayesm WWWDIR=/usr/local/www/bayesm ETCDIR=/usr/local/etc/bayesm --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### DISABLE_MAKE_JOBS=poudriere ---End make.conf--- =======================<phase: check-sanity >============================ ===> License GPLv2 GPLv3 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> R-cran-bayesm-2.2.5_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.8.3.txz [101amd64-default-job-21] Installing pkg-1.8.3... [101amd64-default-job-21] Extracting pkg-1.8.3: .......... done ===> R-cran-bayesm-2.2.5_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of R-cran-bayesm-2.2.5_2 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 GPLv3 accepted by the user ===> Fetching all distfiles required by R-cran-bayesm-2.2.5_2 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 GPLv3 accepted by the user ===> Fetching all distfiles required by R-cran-bayesm-2.2.5_2 for building => SHA256 Checksum OK for bayesm_2.2-5.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2 GPLv3 accepted by the user ===> Fetching all distfiles required by R-cran-bayesm-2.2.5_2 for building ===> Extracting for R-cran-bayesm-2.2.5_2 => SHA256 Checksum OK for bayesm_2.2-5.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for R-cran-bayesm-2.2.5_2 =========================================================================== =======================<phase: build-depends >============================ ===> R-cran-bayesm-2.2.5_2 depends on file: /usr/local/bin/R - not found ===> Installing existing package /packages/All/R-3.3.0.txz [101amd64-default-job-21] Installing R-3.3.0... [101amd64-default-job-21] `-- Installing indexinfo-0.2.4... [101amd64-default-job-21] `-- Extracting indexinfo-0.2.4: .... done [101amd64-default-job-21] `-- Installing libXt-1.1.5,1... [101amd64-default-job-21] | `-- Installing xproto-7.0.28... [101amd64-default-job-21] | `-- Extracting xproto-7.0.28: .......... done [101amd64-default-job-21] | `-- Installing libSM-1.2.2_3,1... [101amd64-default-job-21] | | `-- Installing libICE-1.0.9_1,1... [101amd64-default-job-21] | | `-- Extracting libICE-1.0.9_1,1: .......... done [101amd64-default-job-21] | `-- Extracting libSM-1.2.2_3,1: .......... done [101amd64-default-job-21] | `-- Installing libX11-1.6.3,1... [101amd64-default-job-21] | | `-- Installing kbproto-1.0.7... [101amd64-default-job-21] | | `-- Extracting kbproto-1.0.7: .......... done [101amd64-default-job-21] | | `-- Installing libXdmcp-1.1.2... [101amd64-default-job-21] | | `-- Extracting libXdmcp-1.1.2: ......... done [101amd64-default-job-21] | | `-- Installing libxcb-1.11.1... [101amd64-default-job-21] | | `-- Installing libxml2-2.9.3... [101amd64-default-job-21] | | `-- Extracting libxml2-2.9.3: .......... done [101amd64-default-job-21] | | `-- Installing libpthread-stubs-0.3_6... [101amd64-default-job-21] | | `-- Extracting libpthread-stubs-0.3_6: ..... done [101amd64-default-job-21] | | `-- Installing libXau-1.0.8_3... [101amd64-default-job-21] | | `-- Extracting libXau-1.0.8_3: .......... done [101amd64-default-job-21] | | `-- Extracting libxcb-1.11.1: .......... done [101amd64-default-job-21] | `-- Extracting libX11-1.6.3,1: .......... done [101amd64-default-job-21] `-- Extracting libXt-1.1.5,1: .......... done [101amd64-default-job-21] `-- Installing pango-1.38.0_1... [101amd64-default-job-21] | `-- Installing encodings-1.0.4_3,1... [101amd64-default-job-21] | | `-- Installing font-util-1.3.1... [101amd64-default-job-21] | | `-- Extracting font-util-1.3.1: .......... done [101amd64-default-job-21] | `-- Extracting encodings-1.0.4_3,1: .......... done [101amd64-default-job-21] | `-- Installing fontconfig-2.11.1_2,1... [101amd64-default-job-21] | | `-- Installing expat-2.1.1... [101amd64-default-job-21] | | `-- Extracting expat-2.1.1: .......... done [101amd64-default-job-21] | | `-- Installing freetype2-2.6.3... [101amd64-default-job-21] | | `-- Extracting freetype2-2.6.3: .......... done [101amd64-default-job-21] | `-- Extracting fontconfig-2.11.1_2,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: caching, new cache contents: 0 fonts, 2 dirs /usr/local/share/fonts/encodings: caching, new cache contents: 0 fonts, 1 dirs /usr/local/share/fonts/encodings/large: caching, new cache contents: 0 fonts, 0 dirs /usr/local/share/fonts/util: caching, new cache contents: 0 fonts, 0 dirs /usr/local/lib/X11/fonts: skipping, no such directory /root/.local/share/fonts: skipping, no such directory /root/.fonts: skipping, no such directory Re-scanning /usr/local/share/fonts: caching, new cache contents: 0 fonts, 2 dirs Re-scanning /usr/local/share/fonts/encodings: caching, new cache contents: 0 fonts, 1 dirs /var/db/fontconfig: cleaning cache directory /root/.cache/fontconfig: not cleaning non-existent cache directory /root/.fontconfig: not cleaning non-existent cache directory fc-cache: succeeded [101amd64-default-job-21] | `-- Installing libXft-2.3.2_1... [101amd64-default-job-21] | | `-- Installing libXrender-0.9.9... [101amd64-default-job-21] | | `-- Installing renderproto-0.11.1... [101amd64-default-job-21] | | `-- Extracting renderproto-0.11.1: .... done [101amd64-default-job-21] | | `-- Extracting libXrender-0.9.9: .......... done [101amd64-default-job-21] | `-- Extracting libXft-2.3.2_1: ......... done [101amd64-default-job-21] | `-- Installing harfbuzz-1.2.3... [101amd64-default-job-21] | | `-- Installing cairo-1.14.6,2... [101amd64-default-job-21] | | `-- Installing dri2proto-2.8... [101amd64-default-job-21] | | `-- Extracting dri2proto-2.8: .... done [101amd64-default-job-21] | | `-- Installing glproto-1.4.17... [101amd64-default-job-21] | | `-- Extracting glproto-1.4.17: ...... done <snip> template<typename _Tp> ^ /usr/local/lib/gcc48/include/c++/cmath: In function 'long double std::log(long double)': /usr/local/lib/gcc48/include/c++/cmath:361:22: error: declaration of C function 'long double std::log(long double)' conflicts with log(long double __x) ^ /usr/local/lib/gcc48/include/c++/cmath:357:3: error: previous declaration 'float std::log(float)' here log(float __x) ^ /usr/local/lib/gcc48/include/c++/cmath: At global scope: /usr/local/lib/gcc48/include/c++/cmath:365:3: error: template with C linkage template<typename _Tp> ^ /usr/local/lib/gcc48/include/c++/cmath: In function 'long double std::log10(long double)': /usr/local/lib/gcc48/include/c++/cmath:380:24: error: declaration of C function 'long double std::log10(long double)' conflicts with log10(long double __x) ^ /usr/local/lib/gcc48/include/c++/cmath:376:3: error: previous declaration 'float std::log10(float)' here log10(float __x) ^ /usr/local/lib/gcc48/include/c++/cmath: At global scope: /usr/local/lib/gcc48/include/c++/cmath:384:3: error: template with C linkage template<typename _Tp> ^ /usr/local/lib/gcc48/include/c++/cmath: In function 'long double std::modf(long double, long double*)': /usr/local/lib/gcc48/include/c++/cmath:399:44: error: declaration of C function 'long double std::modf(long double, long double*)' conflicts with modf(long double __x, long double* __iptr) ^ /usr/local/lib/gcc48/include/c++/cmath:395:3: error: previous declaration 'float std::modf(float, float*)' here modf(float __x, float* __iptr) ^ /usr/local/lib/gcc48/include/c++/cmath: In function 'long double std::pow(long double, long double)': /usr/local/lib/gcc48/include/c++/cmath:411:39: error: declaration of C function 'long double std::pow(long double, long double)' conflicts with pow(long double __x, long double __y) ^ /usr/local/lib/gcc48/include/c++/cmath:407:3: error: previous declaration 'float std::pow(float, float)' here pow(float __x, float __y) ^ /usr/local/lib/gcc48/include/c++/cmath: In function 'double std::pow(double, int)': /usr/local/lib/gcc48/include/c++/cmath:418:26: error: declaration of C function 'double std::pow(double, int)' conflicts with pow(double __x, int __i) ^ /usr/local/lib/gcc48/include/c++/cmath:411:3: error: previous declaration 'long double std::pow(long double, long double)' here pow(long double __x, long double __y) ^ /usr/local/lib/gcc48/include/c++/cmath:418:26: error: declaration of C function 'double std::pow(double, int)' conflicts with pow(double __x, int __i) ^ /usr/local/lib/gcc48/include/c++/cmath:407:3: error: previous declaration 'float std::pow(float, float)' here pow(float __x, float __y) ^ /usr/local/lib/gcc48/include/c++/cmath: In function 'float std::pow(float, int)': /usr/local/lib/gcc48/include/c++/cmath:422:25: error: declaration of C function 'float std::pow(float, int)' conflicts with pow(float __x, int __n) ^ /usr/local/lib/gcc48/include/c++/cmath:418:3: error: previous declaration 'double std::pow(double, int)' here pow(double __x, int __i) ^ /usr/local/lib/gcc48/include/c++/cmath:422:25: error: declaration of C function 'float std::pow(float, int)' conflicts with pow(float __x, int __n) ^ /usr/local/lib/gcc48/include/c++/cmath:411:3: error: previous declaration 'long double std::pow(long double, long double)' here pow(long double __x, long double __y) ^ /usr/local/lib/gcc48/include/c++/cmath:422:25: error: declaration of C function 'float std::pow(float, int)' conflicts with pow(float __x, int __n) ^ /usr/local/lib/gcc48/include/c++/cmath:407:3: error: previous declaration 'float std::pow(float, float)' here pow(float __x, float __y) ^ /usr/local/lib/gcc48/include/c++/cmath: In function 'long double std::pow(long double, int)': /usr/local/lib/gcc48/include/c++/cmath:426:31: error: declaration of C function 'long double std::pow(long double, int)' conflicts with pow(long double __x, int __n) ^ /usr/local/lib/gcc48/include/c++/cmath:422:3: error: previous declaration 'float std::pow(float, int)' here pow(float __x, int __n) ^ /usr/local/lib/gcc48/include/c++/cmath:426:31: error: declaration of C function 'long double std::pow(long double, int)' conflicts with pow(long double __x, int __n) ^ /usr/local/lib/gcc48/include/c++/cmath:418:3: error: previous declaration 'double std::pow(double, int)' here pow(double __x, int __i) ^ /usr/local/lib/gcc48/include/c++/cmath:426:31: error: declaration of C function 'long double std::pow(long double, int)' conflicts with pow(long double __x, int __n) ^ /usr/local/lib/gcc48/include/c++/cmath:411:3: error: previous declaration 'long double std::pow(long double, long double)' here pow(long double __x, long double __y) ^ /usr/local/lib/gcc48/include/c++/cmath:426:31: error: declaration of C function 'long double std::pow(long double, int)' conflicts with pow(long double __x, int __n) ^ /usr/local/lib/gcc48/include/c++/cmath:407:3: error: previous declaration 'float std::pow(float, float)' here pow(float __x, float __y) ^ /usr/local/lib/gcc48/include/c++/cmath: At global scope: /usr/local/lib/gcc48/include/c++/cmath:431:3: error: template with C linkage template<typename _Tp, typename _Up> ^ /usr/local/lib/gcc48/include/c++/cmath: In function 'long double std::sin(long double)': /usr/local/lib/gcc48/include/c++/cmath:448:22: error: declaration of C function 'long double std::sin(long double)' conflicts with sin(long double __x) ^ /usr/local/lib/gcc48/include/c++/cmath:444:3: error: previous declaration 'float std::sin(float)' here sin(float __x) ^ /usr/local/lib/gcc48/include/c++/cmath: At global scope: /usr/local/lib/gcc48/include/c++/cmath:452:3: error: template with C linkage template<typename _Tp> ^ /usr/local/lib/gcc48/include/c++/cmath: In function 'long double std::sinh(long double)': /usr/local/lib/gcc48/include/c++/cmath:467:23: error: declaration of C function 'long double std::sinh(long double)' conflicts with sinh(long double __x) ^ /usr/local/lib/gcc48/include/c++/cmath:463:3: error: previous declaration 'float std::sinh(float)' here sinh(float __x) ^ /usr/local/lib/gcc48/include/c++/cmath: At global scope: /usr/local/lib/gcc48/include/c++/cmath:471:3: error: template with C linkage template<typename _Tp> ^ /usr/local/lib/gcc48/include/c++/cmath: In function 'long double std::sqrt(long double)': /usr/local/lib/gcc48/include/c++/cmath:486:23: error: declaration of C function 'long double std::sqrt(long double)' conflicts with sqrt(long double __x) ^ /usr/local/lib/gcc48/include/c++/cmath:482:3: error: previous declaration 'float std::sqrt(float)' here sqrt(float __x) ^ /usr/local/lib/gcc48/include/c++/cmath: At global scope: /usr/local/lib/gcc48/include/c++/cmath:490:3: error: template with C linkage template<typename _Tp> ^ /usr/local/lib/gcc48/include/c++/cmath: In function 'long double std::tan(long double)': /usr/local/lib/gcc48/include/c++/cmath:505:22: error: declaration of C function 'long double std::tan(long double)' conflicts with tan(long double __x) ^ /usr/local/lib/gcc48/include/c++/cmath:501:3: error: previous declaration 'float std::tan(float)' here tan(float __x) ^ /usr/local/lib/gcc48/include/c++/cmath: At global scope: /usr/local/lib/gcc48/include/c++/cmath:509:3: error: template with C linkage template<typename _Tp> ^ /usr/local/lib/gcc48/include/c++/cmath: In function 'long double std::tanh(long double)': /usr/local/lib/gcc48/include/c++/cmath:524:23: error: declaration of C function 'long double std::tanh(long double)' conflicts with tanh(long double __x) ^ /usr/local/lib/gcc48/include/c++/cmath:520:3: error: previous declaration 'float std::tanh(float)' here tanh(float __x) ^ /usr/local/lib/gcc48/include/c++/cmath: At global scope: /usr/local/lib/gcc48/include/c++/cmath:528:3: error: template with C linkage template<typename _Tp> ^ /usr/local/lib/gcc48/include/c++/cmath:805:3: error: template with C linkage template<typename _Tp> ^ /usr/local/lib/gcc48/include/c++/cmath:815:3: error: template with C linkage template<typename _Tp> ^ /usr/local/lib/gcc48/include/c++/cmath:824:3: error: template with C linkage template<typename _Tp> ^ /usr/local/lib/gcc48/include/c++/cmath:833:3: error: template with C linkage template<typename _Tp> ^ /usr/local/lib/gcc48/include/c++/cmath:842:3: error: template with C linkage template<typename _Tp> ^ /usr/local/lib/gcc48/include/c++/cmath:851:3: error: template with C linkage template<typename _Tp> ^ /usr/local/lib/gcc48/include/c++/cmath:860:3: error: template with C linkage template<typename _Tp> ^ /usr/local/lib/gcc48/include/c++/cmath:869:3: error: template with C linkage template<typename _Tp> ^ /usr/local/lib/gcc48/include/c++/cmath:878:3: error: template with C linkage template<typename _Tp> ^ /usr/local/lib/gcc48/include/c++/cmath:887:3: error: template with C linkage template<typename _Tp> ^ /usr/local/lib/gcc48/include/c++/cmath:896:3: error: template with C linkage template<typename _Tp> ^ /usr/local/lib/gcc48/include/c++/cmath:905:3: error: template with C linkage template<typename _Tp> ^ *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/science/R-cran-bayesm/work/bayesm/src ERROR: compilation failed for package 'bayesm' * removing '/wrkdirs/usr/ports/science/R-cran-bayesm/work/stage/usr/local/lib/R/library/bayesm' *** Error code 1 Stop. make: stopped in /usr/ports/science/R-cran-bayesm _______________________________________________ freebsd-pkg-fallout@freebsd.org mailing list https://lists.freebsd.org/mailman/listinfo/freebsd-pkg-fallout To unsubscribe, send any mail to "freebsd-pkg-fallout-unsubscr...@freebsd.org"
