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Maintainer: m...@freebsd.org Last committer: ger...@freebsd.org Ident: $FreeBSD: head/science/ghemical/Makefile 331644 2013-10-26 00:52:33Z gerald $ Log URL: http://beefy2.isc.freebsd.org/bulk/83amd64-default/2013-11-20_01h02m57s/logs/ghemical-3.0.0_1.log Build URL: http://beefy2.isc.freebsd.org/bulk/83amd64-default/2013-11-20_01h02m57s Log: ====>> Building science/ghemical build started at Wed Nov 20 12:37:23 UTC 2013 port directory: /usr/ports/science/ghemical building for: FreeBSD 83amd64-default-job-15 8.3-RELEASE FreeBSD 8.3-RELEASE amd64 maintained by: m...@freebsd.org Makefile ident: $FreeBSD: head/science/ghemical/Makefile 331644 2013-10-26 00:52:33Z gerald $ Poudriere version: 3.1-pre ---Begin Environment--- OSVERSION=803000 UNAME_v=FreeBSD 8.3-RELEASE UNAME_r=8.3-RELEASE FTP_PASSIVE_MODE=YES BLOCKSIZE=K MAIL=/var/mail/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin STATUS=1 MASTERMNT=/usr/local/poudriere/data/build/83amd64-default/ref PKG_EXT=txz tpid=96713 POUDRIERE_BUILD_TYPE=bulk PKGNG=1 PKGNAME=ghemical-3.0.0_1 PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f PKG_ADD=/usr/local/sbin/pkg-static add PWD=/root MASTERNAME=83amd64-default USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes PKG_VERSION=/poudriere/pkg-static version PKG_BIN=/usr/local/sbin/pkg-static ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --enable-gamess --enable-mpqc --enable-openbabel --enable-gtk --enable-threads --enable-mopac7 --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- TMPDIR="/tmp" PKG_CONFIG=pkgconf MAKE=gmake SHELL=/bin/sh CONFIG_SHELL=/bin/sh F77="gfortran46" FC="gfortran46" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc46" ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- PKG_CONFIG=/usr/local/pkg-config TMPDIR="/tmp" SHELL=/bin/sh NO_LINT=YES F77="gfortran46" FC="gfortran46" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc46" ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="gcc46" CFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc46 -fno-strict-aliasing" CPP="cpp46" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc46" CXX="g++46" CXXFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc46 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc46" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444" --End MAKE_ENV-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ghemical DOCSDIR=/usr/local/share/doc/ghemical EXAMPLESDIR=/usr/local/share/examples/ghemical WWWDIR=/usr/local/www/ghemical ETCDIR=/usr/local/etc/ghemical --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### WITH_PKGNG=yes NO_RESTRICTED=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ===> Cleaning for ghemical-3.0.0_1 =======================<phase: check-config >============================ =========================================================================== =======================<phase: pkg-depends >============================ ===> ghemical-3.0.0_1 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg ===> Installing existing package /packages/All/pkg-1.1.4_10.txz Installing pkg-1.1.4_10... done If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of ghemical-3.0.0_1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> Fetching all distfiles required by ghemical-3.0.0_1 for building =========================================================================== =======================<phase: checksum >============================ ===> Fetching all distfiles required by ghemical-3.0.0_1 for building => SHA256 Checksum OK for ghemical-3.0.0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> Fetching all distfiles required by ghemical-3.0.0_1 for building ===> Extracting for ghemical-3.0.0_1 => SHA256 Checksum OK for ghemical-3.0.0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for ghemical-3.0.0_1 ===> Applying FreeBSD patches for ghemical-3.0.0_1 =========================================================================== =======================<phase: build-depends >============================ ===> ghemical-3.0.0_1 depends on executable: f2c - not found ===> Verifying install for f2c in /usr/ports/lang/f2c ===> Installing existing package /packages/All/f2c-20060810_3.txz Installing f2c-20060810_3... done ===> Returning to build of ghemical-3.0.0_1 ===> ghemical-3.0.0_1 depends on executable: obabel - not found ===> Verifying install for obabel in /usr/ports/science/openbabel ===> Installing existing package /packages/All/openbabel-2.3.2.txz Installing openbabel-2.3.2...Installing gettext-0.18.3.1...Installing libiconv-1.14_1... done done Installing libxml2-2.8.0_2...Installing pkgconf-0.9.3... done done Installing python27-2.7.5_4... done Installing python2-2_1... done Installing python-2.7_1,2... done done ==== Note that some of the standard modules are provided as separate ports since they require extra dependencies: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter Install them as needed. ==== ===> Returning to build of ghemical-3.0.0_1 ===> ghemical-3.0.0_1 depends on executable: ld - found ===> ghemical-3.0.0_1 depends on executable: pkgconf - found ===> ghemical-3.0.0_1 depends on executable: gmake - not found ===> Verifying install for gmake in /usr/ports/devel/gmake ===> Installing existing package /packages/All/gmake-3.82_1.txz Installing gmake-3.82_1... done ===> Returning to build of ghemical-3.0.0_1 ===> ghemical-3.0.0_1 depends on executable: gcc46 - not found ===> Verifying install for gcc46 in /usr/ports/lang/gcc ===> Installing existing package /packages/All/gcc-4.6.4.txz Installing gcc-4.6.4...Installing binutils-2.23.2... done Installing gcc-ecj-4.5... done Installing gmp-5.1.3... done Installing mpc-1.0.1...Installing mpfr-3.1.2... done done done ===> Returning to build of ghemical-3.0.0_1 ===> ghemical-3.0.0_1 depends on file: /usr/local/bin/as - found ===> ghemical-3.0.0_1 depends on file: /usr/local/bin/intltool-extract - not found ===> Verifying install for /usr/local/bin/intltool-extract in /usr/ports/textproc/intltool ===> Installing existing package /packages/All/intltool-0.50.2.txz Installing intltool-0.50.2...Installing p5-XML-Parser-2.41_1...Installing expat-2.1.0... done Installing perl5-5.16.3_3...Removing /usr/local/etc/perl5_version... Done. Creating /usr/local/etc/perl5_version... Done. Removing stale symlinks from /usr/bin... Skipping /usr/bin/perl Skipping /usr/bin/perl5 Done. Creating various symlinks in /usr/bin... Symlinking /usr/local/bin/perl5.16.3 to /usr/bin/perl Symlinking /usr/local/bin/perl5.16.3 to /usr/bin/perl5 Done. Cleaning up /etc/manpath.config... Done. Spamming /etc/manpath.config... Done. done done done ===> Returning to build of ghemical-3.0.0_1 =========================================================================== =======================<phase: lib-depends >============================ ===> ghemical-3.0.0_1 depends on shared library: libintl.so - found ===> ghemical-3.0.0_1 depends on shared library: libglut.so - not found ===> Verifying for libglut.so in /usr/ports/graphics/freeglut ===> Installing existing package /packages/All/freeglut-2.8.1.txz Installing freeglut-2.8.1...Installing xproto-7.0.24... done Installing xf86vidmodeproto-2.3.1... done Installing xextproto-7.2.1... done Installing renderproto-0.11.1... done Installing randrproto-1.4.0... done Installing libxcb-1.9.1...Installing libXdmcp-1.1.1... done Installing libXau-1.0.8... done Installing libpthread-stubs-0.3_4... done done Installing libXxf86vm-1.1.3...Installing libXext-1.3.2,1...Installing libX11-1.6.2,1...Installing kbproto-1.0.6... done done done done Installing libXrender-0.9.8... done Installing libXrandr-1.4.2... done Installing libXi-1.7.2,1...Installing libXfixes-5.0.1...Installing fixesproto-5.0... done done Installing inputproto-2.3... done <snip> res_gtk/measure.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/measure.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/measure.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/measure.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/measure.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/measure.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/measure.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/measure.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/measure.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/measure.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/measure.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/measure.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/measure.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/measure.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/measure.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/measure.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] In file included from gtk_app.cpp:46:0: res_gtk/element.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/element.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/element.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/element.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/element.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/element.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/element.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/element.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/element.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/element.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/element.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/element.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/element.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/element.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/element.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/element.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/element.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/element.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/element.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/element.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/element.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/element.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/element.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/element.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/element.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/element.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/element.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/element.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/element.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] In file included from gtk_app.cpp:47:0: res_gtk/bondtype.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/bondtype.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/bondtype.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/bondtype.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/bondtype.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/bondtype.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/bondtype.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/bondtype.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/bondtype.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/bondtype.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/bondtype.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/bondtype.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/bondtype.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/bondtype.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/bondtype.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/bondtype.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/bondtype.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/bondtype.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/bondtype.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/bondtype.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/bondtype.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/bondtype.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/bondtype.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/bondtype.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/bondtype.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/bondtype.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/bondtype.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/bondtype.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/bondtype.xpm:31:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] In file included from gtk_app.cpp:48:0: res_gtk/setup.xpm:30:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/setup.xpm:30:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/setup.xpm:30:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/setup.xpm:30:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/setup.xpm:30:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/setup.xpm:30:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/setup.xpm:30:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/setup.xpm:30:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/setup.xpm:30:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/setup.xpm:30:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/setup.xpm:30:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/setup.xpm:30:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/setup.xpm:30:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/setup.xpm:30:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/setup.xpm:30:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/setup.xpm:30:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/setup.xpm:30:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/setup.xpm:30:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/setup.xpm:30:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/setup.xpm:30:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/setup.xpm:30:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/setup.xpm:30:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/setup.xpm:30:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/setup.xpm:30:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/setup.xpm:30:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/setup.xpm:30:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/setup.xpm:30:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] res_gtk/setup.xpm:30:27: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] mv -f .deps/gtk_app.Tpo .deps/gtk_app.Po g++46 -DHAVE_CONFIG_H -I. -DLOCALE_DIR=\""/usr/local/share/locale"\" -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include -I/usr/local/include/gtkglext-1.0 -I/usr/local/lib/gtkglext-1.0/include -I/usr/local/include/libglade-2.0 -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include/harfbuzz -I/usr/local/include/libxml2 -I/usr/local/include -I/usr/local/include/openbabel-2.0 -I/usr/local/include/ghemical -I/wrkdirs/usr/ports/science/mpqc/work -I/usr/local/include -I/usr/local/include/oglappth -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc46 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc46 -MT gtk_project.o -MD -MP -MF .deps/gtk_project.Tpo -c -o gtk_project.o gtk_project.cpp gtk_project.cpp: In member function 'virtual void gtk_project::start_job_GeomOpt(jobinfo_GeomOpt*)': gtk_project.cpp:183:16: warning: 'GThread* g_thread_create(GThreadFunc, gpointer, gboolean, GError**)' is deprecated (declared at /usr/local/include/glib-2.0/glib/deprecated/gthread.h:100): Use 'g_thread_new' instead [-Wdeprecated-declarations] gtk_project.cpp:183:79: warning: 'GThread* g_thread_create(GThreadFunc, gpointer, gboolean, GError**)' is deprecated (declared at /usr/local/include/glib-2.0/glib/deprecated/gthread.h:100): Use 'g_thread_new' instead [-Wdeprecated-declarations] gtk_project.cpp: In member function 'virtual void gtk_project::start_job_MolDyn(jobinfo_MolDyn*)': gtk_project.cpp:233:16: warning: 'GThread* g_thread_create(GThreadFunc, gpointer, gboolean, GError**)' is deprecated (declared at /usr/local/include/glib-2.0/glib/deprecated/gthread.h:100): Use 'g_thread_new' instead [-Wdeprecated-declarations] gtk_project.cpp:233:78: warning: 'GThread* g_thread_create(GThreadFunc, gpointer, gboolean, GError**)' is deprecated (declared at /usr/local/include/glib-2.0/glib/deprecated/gthread.h:100): Use 'g_thread_new' instead [-Wdeprecated-declarations] gtk_project.cpp: In member function 'virtual void gtk_project::start_job_RandomSearch(jobinfo_RandomSearch*)': gtk_project.cpp:272:16: warning: 'GThread* g_thread_create(GThreadFunc, gpointer, gboolean, GError**)' is deprecated (declared at /usr/local/include/glib-2.0/glib/deprecated/gthread.h:100): Use 'g_thread_new' instead [-Wdeprecated-declarations] gtk_project.cpp:272:84: warning: 'GThread* g_thread_create(GThreadFunc, gpointer, gboolean, GError**)' is deprecated (declared at /usr/local/include/glib-2.0/glib/deprecated/gthread.h:100): Use 'g_thread_new' instead [-Wdeprecated-declarations] mv -f .deps/gtk_project.Tpo .deps/gtk_project.Po g++46 -DHAVE_CONFIG_H -I. -DLOCALE_DIR=\""/usr/local/share/locale"\" -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include -I/usr/local/include/gtkglext-1.0 -I/usr/local/lib/gtkglext-1.0/include -I/usr/local/include/libglade-2.0 -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include/harfbuzz -I/usr/local/include/libxml2 -I/usr/local/include -I/usr/local/include/openbabel-2.0 -I/usr/local/include/ghemical -I/wrkdirs/usr/ports/science/mpqc/work -I/usr/local/include -I/usr/local/include/oglappth -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc46 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc46 -MT gtk_main.o -MD -MP -MF .deps/gtk_main.Tpo -c -o gtk_main.o gtk_main.cpp gtk_main.cpp: In function 'int main(int, char**)': gtk_main.cpp:69:29: warning: 'void g_thread_init(gpointer)' is deprecated (declared at /usr/local/include/glib-2.0/glib/deprecated/gthread.h:261) [-Wdeprecated-declarations] gtk_main.cpp:69:47: warning: 'void g_thread_init(gpointer)' is deprecated (declared at /usr/local/include/glib-2.0/glib/deprecated/gthread.h:261) [-Wdeprecated-declarations] mv -f .deps/gtk_main.Tpo .deps/gtk_main.Po /bin/sh ../libtool --tag=CXX --mode=link g++46 -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc46 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc46 -Wl,-rpath=/usr/local/lib/gcc46 -o ghemical fileio.o filetrans.o custom_app.o custom_camera.o custom_lights.o project.o spline.o pangofont_wcl.o oglview_wcl.o ac_stor_wcl.o p1dview_wcl.o p2dview_wcl.o eldview_wcl.o rcpview_wcl.o gpcview_wcl.o ogl_plane.o ogl_surface.o ogl_ribbon.o gtk_simple_dialogs.o gtk_glade_dialog.o gtk_file_export_dialog.o gtk_file_import_dialog.o gtk_geomopt_dialog.o gtk_moldyn_dialog.o gtk_progress_dialog.o gtk_setup_dialog.o gtk_stereo_dialog.o gtk_trajview_dialog.o gtk_wnd.o gtk_oglview_wnd.o gtk_p1dview_wnd.o gtk_p2dview_wnd.o gtk_eldview_wnd.o gtk_rcpview_wnd.o gtk_gpcview_wnd.o gtk_app.o gtk_project.o gtk_main.o -lm -L/usr/X11R6/lib -lgthread-2.0 -pthread -L/usr/local/lib -lglib-2.0 -lintl -lgtkglext-x11-1.0 -lgdkglext-x11-1.0 -lGLU -lGL -lXmu -lXt -lSM -lICE -lpangox-1.0 -R/usr/local/lib -Wl,--export-dynam ic -lgmodule-2.0 -lglade-2.0 -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -lXext -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -latk-1.0 -lcairo -pthread -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype -L/usr/local/lib -lxml2 -L/usr/local/lib -lopenbabel -lghemical -lSCpsi -lSCmbptr12 -lSCmbpt -lSCcints -lSCdft -lSCscf -lSCwfn -lSCsolvent -lSCintv3 -lSCbasis -lSCmolecule -lSCisosurf -lSCoptimize -lSCsymmetry -lSCscmat -lSCoint3 -lSCoptions -lSCgroup -lSCrender -lSCmisc -lSCstate -lSCkeyval -lSCclass -lSCcontainer -lSCref -lderiv -lr12 -lint -lfl -pthread -llapack -lblas -L/usr/local/lib/gcc46/gcc/x86_64-portbld-freebsd8.3/4.6.4 -L/usr/local/lib/gcc46/gcc/x86_64-portbld-freebsd8.3/4.6.4/../../../../../x86_64-portbld-freebsd8.3/lib -L/usr/local/lib/gcc46/gcc/x86_64-portbld-freebsd8.3/4.6.4/../../.. -lgfortran -lm -lquadmath -L/usr/local/lib -lGL -lGLU -loglappth libtool: link: g++46 -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc46 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc46 -Wl,-rpath=/usr/local/lib/gcc46 -o ghemical fileio.o filetrans.o custom_app.o custom_camera.o custom_lights.o project.o spline.o pangofont_wcl.o oglview_wcl.o ac_stor_wcl.o p1dview_wcl.o p2dview_wcl.o eldview_wcl.o rcpview_wcl.o gpcview_wcl.o ogl_plane.o ogl_surface.o ogl_ribbon.o gtk_simple_dialogs.o gtk_glade_dialog.o gtk_file_export_dialog.o gtk_file_import_dialog.o gtk_geomopt_dialog.o gtk_moldyn_dialog.o gtk_progress_dialog.o gtk_setup_dialog.o gtk_stereo_dialog.o gtk_trajview_dialog.o gtk_wnd.o gtk_oglview_wnd.o gtk_p1dview_wnd.o gtk_p2dview_wnd.o gtk_eldview_wnd.o gtk_rcpview_wnd.o gtk_gpcview_wnd.o gtk_app.o gtk_project.o gtk_main.o -pthread -Wl,--export-dynamic -pthread -pthread -L/usr/X11R6/lib -L/usr/local/lib /usr/local/lib/libgtkglext-x11-1.0.so /usr/local/lib/libgdkglext-x11-1.0.so /usr/local/lib/libXmu.so /usr/local/lib/libXt.so /usr/local/lib/libSM.so / usr/local/lib/libICE.so /usr/local/lib/libpangox-1.0.so /usr/local/lib/libglade-2.0.so -L/usr/lib /usr/local/lib/libgtk-x11-2.0.so /usr/local/lib/libgdk-x11-2.0.so /usr/local/lib/libpangocairo-1.0.so /usr/local/lib/libharfbuzz.so -lgraphite2 /usr/local/lib/libXinerama.so /usr/local/lib/libXi.so /usr/local/lib/libXrandr.so /usr/local/lib/libXext.so /usr/local/lib/libXcursor.so /usr/local/lib/libXcomposite.so /usr/local/lib/libXdamage.so /usr/local/lib/libXfixes.so /usr/local/lib/libatk-1.0.so /usr/local/lib/libcairo.so /usr/local/lib/libpixman-1.so /usr/local/lib/libxcb-shm.so /usr/local/lib/libxcb-render.so /usr/local/lib/libXrender.so /usr/local/lib/libX11.so /usr/local/lib/libxcb.so /usr/local/lib/libXau.so /usr/local/lib/libXdmcp.so /usr/local/lib/libpthread-stubs.so -lrpcsvc /usr/local/lib/libgdk_pixbuf-2.0.so -lpng15 /usr/local/lib/libgio-2.0.so /usr/local/lib/libpangoft2-1.0.so /usr/local/lib/libpango-1.0.so /usr/local/lib/libgmodule-2.0.so /usr/local/lib/libgthread-2.0.so /us r/local/lib/libgobject-2.0.so /usr/local/lib! /libffi.so /usr/local/lib/libglib-2.0.so /usr/local/lib/libpcre.so /usr/local/lib/libintl.so /usr/local/lib/libfontconfig.so /usr/local/lib/libexpat.so /usr/local/lib/libfreetype.so -lbz2 /usr/local/lib/libxml2.so -lz -llzma /usr/local/lib/libiconv.so -lopenbabel /usr/local/lib/libghemical.so /usr/local/lib/libSCpsi.so /usr/local/lib/libSCmbptr12.so /usr/local/lib/libSCmbpt.so /usr/local/lib/libSCcints.so /usr/local/lib/libSCdft.so /usr/local/lib/libSCscf.so /usr/local/lib/libSCwfn.so /usr/local/lib/libSCsolvent.so /usr/local/lib/libSCintv3.so /usr/local/lib/libSCbasis.so /usr/local/lib/libSCmolecule.so /usr/local/lib/libSCisosurf.so /usr/local/lib/libSCoptimize.so /usr/local/lib/libSCsymmetry.so /usr/local/lib/libSCscmat.so /usr/local/lib/libSCoint3.so /usr/local/lib/libSCoptions.so /usr/local/lib/libSCgroup.so /usr/local/lib/libSCrender.so /usr/local/lib/libSCmisc.so /usr/local/lib/libSCstate.so /usr/local/lib/libSCkeyval.so /usr/local/lib/libSCclass.so /usr/local/lib/libSCcontain er.so /usr/local/lib/libSCref.so /usr/local/lib/libderiv.so /usr/local/lib/libr12.so /usr/local/lib/libint.so -lfl -llapack -lblas -L/usr/local/lib/gcc46/gcc/x86_64-portbld-freebsd8.3/4.6.4 -L/usr/local/lib/gcc46/gcc/x86_64-portbld-freebsd8.3/4.6.4/../../../../../x86_64-portbld-freebsd8.3/lib -L/usr/local/lib/gcc46/gcc/x86_64-portbld-freebsd8.3/4.6.4/../../.. -lgfortran -lm -lquadmath /usr/local/lib/libGLU.so -lGL /usr/local/lib/liboglappth.so -pthread -Wl,-rpath -Wl,/usr/local/lib -Wl,-rpath -Wl,/usr/local/lib fileio.o: In function `WriteGPR_v100(project&, std::basic_ostream<char, std::char_traits<char> >&)': fileio.cpp:(.text+0x273): undefined reference to `std::ctype<char>::_M_widen_init() const' fileio.cpp:(.text+0x3d2): undefined reference to `std::ctype<char>::_M_widen_init() const' fileio.cpp:(.text+0x558): undefined reference to `std::ctype<char>::_M_widen_init() const' fileio.cpp:(.text+0x657): undefined reference to `std::ctype<char>::_M_widen_init() const' fileio.cpp:(.text+0x674): undefined reference to `std::ctype<char>::_M_widen_init() const' fileio.o:fileio.cpp:(.text+0x6f9): more undefined references to `std::ctype<char>::_M_widen_init() const' follow gtk_app.o: In function `gtk_app::AtomRemoved(atom*)': gtk_app.cpp:(.text+0xde): undefined reference to `std::__detail::_List_node_base::_M_unhook()' gtk_app.o: In function `gtk_app::BondRemoved(bond*)': gtk_app.cpp:(.text+0x15e): undefined reference to `std::__detail::_List_node_base::_M_unhook()' gtk_app.o: In function `gtk_app::AtomAdded(atom*)': gtk_app.cpp:(.text+0x310): undefined reference to `std::__detail::_List_node_base::_M_hook(std::__detail::_List_node_base*)' gtk_app.o: In function `gtk_app::BondAdded(bond*)': gtk_app.cpp:(.text+0x3a0): undefined reference to `std::__detail::_List_node_base::_M_hook(std::__detail::_List_node_base*)' gtk_app.o: In function `gtk_app::ClearChainsView()': gtk_app.cpp:(.text+0x4c8): undefined reference to `std::__detail::_List_node_base::_M_unhook()' gtk_app.cpp:(.text+0x511): undefined reference to `std::__detail::_List_node_base::_M_unhook()' gtk_app.o: In function `std::list<pv_viewsobjs_record*, std::allocator<pv_viewsobjs_record*> >::erase(std::_List_iterator<pv_viewsobjs_record*>) [clone .isra.93]': gtk_app.cpp:(.text+0x675): undefined reference to `std::__detail::_List_node_base::_M_unhook()' gtk_app.o: In function `gtk_app::ObjectAdded(ogl_smart_object*)': gtk_app.cpp:(.text+0x9a4): undefined reference to `std::__detail::_List_node_base::_M_hook(std::__detail::_List_node_base*)' gtk_app.o: In function `gtk_app::PlottingClientAdded(base_wcl*)': gtk_app.cpp:(.text+0xa7f): undefined reference to `std::__detail::_List_node_base::_M_hook(std::__detail::_List_node_base*)' gtk_app.o: In function `gtk_app::GraphicsClientAdded(oglview_wcl*)': gtk_app.cpp:(.text+0xbb8): undefined reference to `std::__detail::_List_node_base::_M_hook(std::__detail::_List_node_base*)' gtk_app.o: In function `gtk_app::LightAdded(ogl_light*)': gtk_app.cpp:(.text+0xd50): undefined reference to `std::__detail::_List_node_base::_M_hook(std::__detail::_List_node_base*)' gtk_app.cpp:(.text+0xe7b): undefined reference to `std::__detail::_List_node_base::_M_hook(std::__detail::_List_node_base*)' gtk_app.o: In function `gtk_app::sPrintToLog(char const*)': gtk_app.cpp:(.text+0x2528): undefined reference to `std::ctype<char>::_M_widen_init() const' gtk_app.o: In function `gtk_app::maintb_tool_Measure(void*, unsigned int, _GtkWidget*)': gtk_app.cpp:(.text+0x28d4): undefined reference to `std::ctype<char>::_M_widen_init() const' gtk_app.cpp:(.text+0x2984): undefined reference to `std::ctype<char>::_M_widen_init() const' gtk_app.o: In function `gtk_app::maintb_tool_RotateZ(void*, unsigned int, _GtkWidget*)': gtk_app.cpp:(.text+0x2a24): undefined reference to `std::ctype<char>::_M_widen_init() const' gtk_app.cpp:(.text+0x2ad4): undefined reference to `std::ctype<char>::_M_widen_init() const' gtk_app.o:gtk_app.cpp:(.text+0x2b74): more undefined references to `std::ctype<char>::_M_widen_init() const' follow gtk_app.o: In function `gtk_app::BuildChainsView()': gtk_app.cpp:(.text+0x391a): undefined reference to `std::__detail::_List_node_base::_M_hook(std::__detail::_List_node_base*)' gtk_app.cpp:(.text+0x3e28): undefined reference to `std::__detail::_List_node_base::_M_hook(std::__detail::_List_node_base*)' gtk_app.o: In function `gtk_app::mainmenu_HelpAbout(void*, unsigned int, _GtkWidget*)': gtk_app.cpp:(.text+0x6279): undefined reference to `std::ctype<char>::_M_widen_init() const' gtk_app.cpp:(.text+0x6819): undefined reference to `std::ctype<char>::_M_widen_init() const' gtk_app.cpp:(.text+0x6834): undefined reference to `std::ctype<char>::_M_widen_init() const' gtk_app.cpp:(.text+0x6854): undefined reference to `std::ctype<char>::_M_widen_init() const' gtk_app.cpp:(.text+0x6874): undefined reference to `std::ctype<char>::_M_widen_init() const' gtk_app.o:gtk_app.cpp:(.text+0x6894): more undefined references to `std::ctype<char>::_M_widen_init() const' follow gtk_app.o: In function `gtk_app::CameraAdded(custom_camera*)': gtk_app.cpp:(.text+0x78c6): undefined reference to `std::__detail::_List_node_base::_M_hook(std::__detail::_List_node_base*)' gtk_app.o: In function `gtk_app::viewsobjs_Delete(_GtkWidget*, void*)': gtk_app.cpp:(.text+0x9f74): undefined reference to `std::ctype<char>::_M_widen_init() const' gtk_app.cpp:(.text+0xa309): undefined reference to `std::ctype<char>::_M_widen_init() const' gtk_app.o: In function `gtk_app::viewsobjs_SetCurrent(_GtkWidget*, void*)': gtk_app.cpp:(.text+0xb284): undefined reference to `std::ctype<char>::_M_widen_init() const' gtk_app.cpp:(.text+0xb334): undefined reference to `std::ctype<char>::_M_widen_init() const' gtk_project.o: In function `gtk_project::~gtk_project()': gtk_project.cpp:(.text+0x9e4): undefined reference to `std::ctype<char>::_M_widen_init() const' gtk_project.o:gtk_project.cpp:(.text+0xb44): more undefined references to `std::ctype<char>::_M_widen_init() const' follow /usr/local/lib/libghemical.so: undefined reference to `std::__detail::_List_node_base::_M_hook(std::__detail::_List_node_base*)@GLIBCXX_3.4.15' /usr/local/lib/libghemical.so: undefined reference to `std::__detail::_List_node_base::_M_unhook()@GLIBCXX_3.4.15' /usr/local/lib/libghemical.so: undefined reference to `std::__detail::_List_node_base::swap(std::__detail::_List_node_base&, std::__detail::_List_node_base&)@GLIBCXX_3.4.15' /usr/local/lib/libghemical.so: undefined reference to `std::__detail::_List_node_base::_M_transfer(std::__detail::_List_node_base*, std::__detail::_List_node_base*)@GLIBCXX_3.4.15' /usr/local/lib/libghemical.so: undefined reference to `std::ctype<char>::_M_widen_init() const@GLIBCXX_3.4.11' collect2: ld returned 1 exit status gmake[3]: *** [ghemical] Error 1 gmake[3]: Leaving directory `/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/src' gmake[2]: *** [all-recursive] Error 1 gmake[2]: Leaving directory `/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/src' gmake[1]: *** [all] Error 2 gmake[1]: Leaving directory `/wrkdirs/usr/ports/science/ghemical/work/ghemical-3.0.0/src' gmake: *** [all-recursive] Error 1 *** Error code 1 Stop in /usr/ports/science/ghemical. ===> Cleaning for ghemical-3.0.0_1 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