I moved the date before the expiring and restarted the services one by one as 
you listed (systemctl restart dirsrv@my-domain, systemctl restart krb5kdc etc.)

then:
[root@ipa1 ~]# ipactl status
Directory Service: RUNNING
krb5kdc Service: RUNNING
kadmin Service: RUNNING
named Service: STOPPED (if I do systemctl status named it says running)
httpd Service: RUNNING
ipa-custodia Service: RUNNING
ntpd Service: RUNNING
pki-tomcatd Service: STOPPED
ipa-otpd Service: STOPPED
ipa-dnskeysyncd Service: STOPPED
ipa: INFO: The ipactl command was successful

pki-tomcatd failed to start:

# systemctl restart pki-tomcatd@ITEC-LAB
Job for pki-tomcatd@ITEC-LAB.service failed because the control process exited 
with error code. See "systemctl status pki-tomcatd@ITEC-LAB.service" and 
"journalctl -xe" for details.

# journalctl -xe 
nov 17 18:22:31 ipa1.itec.lab systemd[1]: Unit pki-tomcatd@ITEC-LAB.service 
entered failed state.
nov 17 18:22:31 ipa1.itec.lab audispd[24456]: node=ipa1.itec.lab 
type=SERVICE_START msg=audit(1605637351.916:7091): pid=1 uid=0 auid=4294967295 
ses=4294967295 msg='unit=pki-tomc
nov 17 18:22:31 ipa1.itec.lab systemd[1]: pki-tomcatd@ITEC-LAB.service failed.
nov 17 18:22:31 ipa1.itec.lab polkitd[30556]: Unregistered Authentication Agent 
for unix-process:17970:71502359 (system bus name :1.1719, object path 
/org/freedesktop/PolicyKit1
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