Hi Rob

Thanks for your suggestion. I've done the following which has got me a step 
closer...

I created the following symlink:
sudo ln -s /usr/share/pki/server/conf/Catalina/localhost/rewrite.config 
/etc/pki/pki-tomcat/Catalina/localhost/rewrite.config

Then edited this file:
sudo vi /etc/pki/pki-tomcat/server.xml

And added in this line after line 132:
<Valve className="org.apache.catalina.valves.rewrite.RewriteValve"/>

Ran the upgrade command:
sudo ipa-server-upgrade

Now when I run sudo ipa-acme-manage pruning --config-show I get the following 
which is different to before and sounds less bad:
Certificate pruning requires random serial numbers
The ipa-acme-manage command failed.

I did the above on both machines. Machine A is the CA master.

The health check is still showing the same errors. Anyone got any ideas why the 
health check is using the wrong hostname for machine B and how I can fix it? I 
cant figure out where its getting the wrong hostname from. The only reference I 
can find to wrong host names is in some old certificates which I have revoked 
in the web UI.
-- 
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