Shen-Mou, In older freesurfer installations, which did not include the MINC tools directly, but were included in a separate download, we recommended installing that separate download in the same path as that which exists at our center, which is /usr/pubsw/packages/mni/current/.
A goal of the new freesurfer installation is to make it totally self- contained, and able to be installed in any directory, and not require admin priveledges. So now the MINC tools are included in the freesurfer/lib/mni directory, and do not need to be installed in /usr/pubsw/packages/mni/current (although there is still an issue with certain mni tools looking for perl in the path /usr/pubsw/bin, but that is being resolved soon, and the installation instructions describe the temporary hack of creating a symbolic link). So, the easiest way to confirm that your installation is correct is, after sourcing SetUpFreeSurfer.csh, check that all the path names point into your new installation, and running 'which nu_correct' should also point into your new installation. Nick On Wed, 2005-09-21 at 16:33 -0400, Hsu, Shen-Mou wrote: > Many thanks Nick! > > It is working now after changing setenv MINC_BIN_DIR > /usr/pubsw/packages/mni/current/bin (the default) into setenv MINC_BIN_DIR > /home/riobravo/freesurfer/lib/mni/bin (the home directory). Then, I got the > latest version of nu_correct. Is there any possibility that my installization > went wrong? I reckon that in principle, the MINC tool should be store in the > /usr/pubsw/packages/mni/current/bin? > > thanks again! Shen-Mou > > > -----Original Message----- > From: Nick Schmansky [mailto:[EMAIL PROTECTED] > Sent: Wed 9/21/2005 1:14 PM > To: Hsu, Shen-Mou > Cc: Brian T. Quinn; Freesurfer Mailing List > Subject: RE: [Freesurfer] A problem occurred while running recon-all in > thenew dev version > > Hsu, > > The MINC toolkit is now included in the Freesurfer distribution, and > nu_correct should be version 1.10. > > Since you say that nu_correct returns a version 1.04, its my guess that > you have an older version of the MINC toolkit installed somewhere in > your path. Remove any setup commands to older MINC toolkits in > your .cshrc file. > > The new $FREESURFER_HOME/FreeSurferEnv.csh script (called by > SetUpFreeSurfer.csh) will setup the paths to the newly installed MINC > toolkit for you. > > You can confirm which tools are used by typing: > > which nu_correct > > and > > which nu_estimate_np_and_em > > These binaries should be in a subdirectory of your new FreeSurfer > installation. Also type: > > echo $PERL5LIB > > and confirm that the path points to your new installation. > > Nick > > > On Wed, 2005-09-21 at 13:00 -0400, Hsu, Shen-Mou wrote: > > Dear All, > > > > The problem is fixed as Brian suggested (Thanks Brian), but there is a new > > problem while running the recon-all. Nu_correct somehow crashes during the > > proceesing. The follows are the details. Could anyone give me an idea? > > > > Thanks a lot in advance! > > > > p.s. nu_correct seems fine while typing nuc_correct, it returns vesion info > > (1.04). > > > > [EMAIL PROTECTED] ~/freesurfer]$ recon-all -autorecon1 -subjid Sub05 > > INFO: SUBJECTS_DIR is /home/riobravo/freesurfer/subjects > > Actual FREESURFER_HOME /home/riobravo/freesurfer > > Linux localhost.localdomain 2.4.20-6smp #1 SMP Thu Feb 27 09:59:40 EST 2003 > > i686 i686 i386 GNU/Linux > > ######################################## > > program versions used > > $Id: recon-all-nmr,v 1.104 2005/09/07 15:59:46 greve Exp $ > > $Id: mri_motion_correct2,v 1.9 2004/12/14 03:37:42 greve Exp $ > > mri_convert --version > > $ > > $Header: /software/source/minc/cvsroot/minc/progs/rawtominc/rawtominc.c,v > > 6.3 1999/10/19 14:45:31 neelin Exp $ > > minctracc.c > > $Header: > > /software/source/registration/mni_autoreg/minctracc/Main/minctracc.c,v 96.3 > > 2000/03/15 08:42:41 stever Exp $ > > $Header: > > /software/source/minc/cvsroot/minc/progs/mincresample/mincresample.c,v 6.2 > > 1999/10/19 14:45:27 neelin Exp $ > > $Header: > > /software/source/minc/cvsroot/minc/progs/mincaverage/mincaverage.c,v 6.1 > > 1999/10/19 14:45:18 neelin Exp $ > > $Id: talairach2,v 1.8 2005/09/06 13:54:17 nicks Exp $ > > mri_convert --version > > $ > > # $Id: mritotal.in,v 1.10 2000/06/14 12:55:01 louis Exp $ > > Program nu_correct, built from: > > Package MNI N3, version 1.04, compiled by [EMAIL PROTECTED] > > (i686-pc-linux-gnu) on 2001-08-09 at 10:52:16 > > ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: > > $Name: $ TimeStamp: 05/09/21-14:13:44-GMT CVS: $Id: mri_normalize.c,v 1.36 > > 2005/08/15 14:05:49 fischl Exp $ User: UNKNOWN Machine: > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > CompilerName: GCC CompilerVersion: 30200 > > ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: > > $Name: $ TimeStamp: 05/09/21-14:13:44-GMT CVS: $Id: mri_watershed.cpp,v > > 1.34 2005/08/15 14:05:17 fischl Exp $ User: UNKNOWN Machine: > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > CompilerName: GCC CompilerVersion: 30200 > > ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: > > $ TimeStamp: 05/09/21-14:13:44-GMT CVS: $Id: mri_segment.c,v 1.27 > > 2005/08/24 19:48:08 fischl Exp $ User: UNKNOWN Machine: > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > CompilerName: GCC CompilerVersion: 30200 > > ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: $ > > TimeStamp: 05/09/21-14:13:44-GMT CVS: $Id: mri_fill.c,v 1.95 2005/09/05 > > 20:49:50 fischl Exp $ User: UNKNOWN Machine: localhost.localdomain > > Platform: Linux PlatformVersion: 2.4.20-6smp CompilerName: GCC > > CompilerVersion: 30200 > > ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: > > $Name: $ TimeStamp: 05/09/21-14:13:44-GMT CVS: $Id: mri_tessellate.c,v > > 1.24 2005/08/18 16:19:10 fischl Exp $ User: UNKNOWN Machine: > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > CompilerName: GCC CompilerVersion: 30200 > > ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: > > $ TimeStamp: 05/09/21-14:13:44-GMT CVS: $Id: mris_smooth.c,v 1.13 > > 2005/08/15 14:22:53 fischl Exp $ User: UNKNOWN Machine: > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > CompilerName: GCC CompilerVersion: 30200 > > ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: > > $Name: $ TimeStamp: 05/09/21-14:13:44-GMT CVS: $Id: mris_inflate.c,v 1.28 > > 2005/08/15 14:23:37 fischl Exp $ User: UNKNOWN Machine: > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > CompilerName: GCC CompilerVersion: 30200 > > ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: > > $ TimeStamp: 05/09/21-14:13:44-GMT CVS: $Id: mris_sphere.c,v 1.31 > > 2005/08/15 14:24:12 fischl Exp $ User: UNKNOWN Machine: > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > CompilerName: GCC CompilerVersion: 30200 > > ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: > > $Name: $ TimeStamp: 05/09/21-14:13:44-GMT CVS: $Id: mris_fix_topology.c,v > > 1.31 2005/08/15 14:28:43 fischl Exp $ User: UNKNOWN Machine: > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > CompilerName: GCC CompilerVersion: 30200 > > ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: > > $Name: $ TimeStamp: 05/09/21-14:13:44-GMT CVS: $Id: mris_euler_number.c,v > > 1.4 2003/09/05 04:45:41 kteich Exp $ User: UNKNOWN Machine: > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > CompilerName: GCC CompilerVersion: 30200 > > ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: > > $Name: $ TimeStamp: 05/09/21-14:13:44-GMT CVS: $Id: mris_make_surfaces.c,v > > 1.60 2005/08/22 17:47:27 fischl Exp $ User: UNKNOWN Machine: > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > CompilerName: GCC CompilerVersion: 30200 > > ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: > > $ TimeStamp: 05/09/21-14:13:44-GMT CVS: $Id: mris_sphere.c,v 1.31 > > 2005/08/15 14:24:12 fischl Exp $ User: UNKNOWN Machine: > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > CompilerName: GCC CompilerVersion: 30200 > > ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: > > $Name: $ TimeStamp: 05/09/21-14:13:44-GMT CVS: $Id: mris_register.c,v 1.30 > > 2005/08/15 14:24:44 fischl Exp $ User: UNKNOWN Machine: > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > CompilerName: GCC CompilerVersion: 30200 > > ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: > > $ TimeStamp: 05/09/21-14:13:44-GMT CVS: $Id: mrisp_paint.c,v 1.6 > > 2005/02/14 04:30:19 segonne Exp $ User: UNKNOWN Machine: > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > CompilerName: GCC CompilerVersion: 30200 > > ProgramName: mri_label2label ProgramArguments: -all-info ProgramVersion: > > $Name: $ TimeStamp: 05/09/21-14:13:44-GMT CVS: $Id: mri_label2label.c,v > > 1.21 2004/11/16 00:35:37 greve Exp $ User: UNKNOWN Machine: > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > CompilerName: GCC CompilerVersion: 30200 > > ProgramName: mris2rgb ProgramArguments: -all-info ProgramVersion: $Name: $ > > TimeStamp: 05/09/21-14:13:44-GMT CVS: $Id: mris2rgb.c,v 1.33 2005/06/08 > > 19:45:07 nicks Exp $ User: UNKNOWN Machine: localhost.localdomain Platform: > > Linux PlatformVersion: 2.4.20-6smp CompilerName: GCC CompilerVersion: 30200 > > ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: > > $Name: $ TimeStamp: 05/09/21-14:13:44-GMT CVS: $Id: mri_em_register.c,v > > 1.50 2005/05/30 20:36:05 xhan Exp $ User: UNKNOWN Machine: > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > CompilerName: GCC CompilerVersion: 30200 > > ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: > > $Name: $ TimeStamp: 05/09/21-14:13:44-GMT CVS: $Id: mri_ca_normalize.c,v > > 1.31 2005/08/15 14:14:22 fischl Exp $ User: UNKNOWN Machine: > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > CompilerName: GCC CompilerVersion: 30200 > > ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: > > $Name: $ TimeStamp: 05/09/21-14:13:44-GMT CVS: $Id: mri_ca_register.c,v > > 1.34 2005/08/18 13:29:27 fischl Exp $ User: UNKNOWN Machine: > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > CompilerName: GCC CompilerVersion: 30200 > > ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: > > $Name: $ TimeStamp: 05/09/21-14:13:44-GMT CVS: $Id: mri_ca_label.c,v 1.62 > > 2005/08/18 13:29:41 fischl Exp $ User: UNKNOWN Machine: > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > CompilerName: GCC CompilerVersion: 30200 > > ####################################### > > GCA RB40_talairach_2005-07-20.gca > > AvgCurvTif average.curvature.filled.buckner40.tif > > GCS curvature.buckner40.filled.desikan_killiany.gcs > > ####################################### > > ~/freesurfer/subjects/Sub05 > > Using mgz format > > --------------------------------------------- > > MotionCor Wed Sep 21 10:13:44 EDT 2005 > > WARNING: only one run found. This is OK, but motion > > correction cannot be performed on one run, so I'll > > copy the run to rawavg and continue. > > /home/riobravo/freesurfer/subjects/Sub05 > > mri_convert /home/riobravo/freesurfer/subjects/Sub05/mri/rawavg.mgz > > /home/riobravo/freesurfer/subjects/Sub05/mri/orig.mgz --conform > > mri_convert /home/riobravo/freesurfer/subjects/Sub05/mri/rawavg.mgz > > /home/riobravo/freesurfer/subjects/Sub05/mri/orig.mgz --conform > > reading from /home/riobravo/freesurfer/subjects/Sub05/mri/rawavg.mgz... > > TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 > > i_ras = (0, -1, 0) > > j_ras = (0, 0, -1) > > k_ras = (-1, 0, 0) > > Original Data has (1, 1, 1) mm size and (256, 256, 160) voxels. > > Data is conformed to 1 mm size and 256 voxels for all directions > > changing data type from 4 to 0 (noscale = 0)... > > MRIchangeType: Building histogram > > Reslicing using trilinear interpolation > > writing to /home/riobravo/freesurfer/subjects/Sub05/mri/orig.mgz... > > --------------------------------------------- > > Nu Intensity Correction Wed Sep 21 10:14:06 EDT 2005 > > mri_convert orig.mgz nu0.mnc > > mri_convert orig.mgz nu0.mnc > > reading from orig.mgz... > > TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 > > i_ras = (-1, 0, 0) > > j_ras = (0, 0, -1) > > k_ras = (0, 1, 0) > > writing to nu0.mnc... > > nu_correct -clobber nu0.mnc nu1.mnc > > nu_estimate_np_and_em: data directory for package "N3" not found in > > /home/riobravo/freesurfer/lib/mni/data > > [EMAIL PROTECTED]:/home/riobravo/freesurfer/subjects/Sub05/mri/] > > [2005-09-21 10:14:18] running: > > /usr/pubsw/packages/mni/current/bin/nu_estimate_np_and_em -parzen -log > > -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask > > -nonotify -b_spline 1 -distance 200 -quiet -execute -clobber -nokeeptmp > > -tmpdir /usr/tmp/nu_correct_7260/ nu0.mnc nu1.imp > > > > nu_correct: crashed while running nu_estimate_np_and_em (termination > > status=512) > > ERROR: nu_correct > > Linux localhost.localdomain 2.4.20-6smp #1 SMP Thu Feb 27 09:59:40 EST 2003 > > i686 i686 i386 GNU/Linux > > recon-all exited with errors at Wed Sep 21 10:14:18 EDT 2005 > > > > > > > > -----Original Message----- > > From: Brian T. Quinn [mailto:[EMAIL PROTECTED] > > Sent: Wed 9/21/2005 10:01 AM > > To: Hsu, Shen-Mou > > Cc: freesurfer@nmr.mgh.harvard.edu > > Subject: Re: [Freesurfer] A problem occurred while running recon-all in the > > new dev version > > > > try renaming the .mgz volume (Sub05.mgz) in orig with a 3 digit zero > > padded number such as 001.mgz > > > > thanks, > > brian > > > > On Wed, 21 Sep 2005, Hsu, Shen-Mou wrote: > > > > > Hi! > > > > > > I am running the freesurfer on redhat 9 with the latest release > > > (freesurfer-Linux-rh9-dev20050915-full.tar.gz.) Unfortunately, while > > > running recon-all -autorecon1, it returns that no data is found, but the > > > data exists indeed. Could anyone help me this out? > > > > > > Many thanks! > > > > > > Shen-Mou Hsu > > > > > > Here are the details. > > > > > > [EMAIL PROTECTED] freesurfer]$ tcsh > > > Setting up environment for FreeSurfer/FS-FAST (and FSL) > > > FREESURFER_HOME /home/riobravo/freesurfer > > > FSFAST_HOME /home/riobravo/freesurfer/fsfast > > > SUBJECTS_DIR /home/riobravo/freesurfer/subjects > > > FUNCTIONALS_DIR /home/riobravo/freesurfer/sessions > > > MINC_BIN_DIR /usr/pubsw/packages/mni/current/bin > > > MINC_LIB_DIR /usr/pubsw/packages/mni/current/lib > > > PERL5LIB > > > GSL_DIR /home/riobravo/freesurfer/lib/gsl > > > QTDIR /home/riobravo/freesurfer/lib/qt > > > TCLLIBPATH /home/riobravo/freesurfer/lib/tcltktixblt/lib > > > FSL_DIR /home/riobravo/fsl > > > > > > [EMAIL PROTECTED] orig]$ mri_convert > > > /home/riobravo/Exp3/prefreesurfer/Sub05MP_ave+orig.BRIK Sub05.mgz > > > [EMAIL PROTECTED] orig]$ ls > > > Sub05.mgz > > > > > > [EMAIL PROTECTED] ~/freesurfer]$ recon-all -autorecon1 -subjid Sub05 > > > INFO: SUBJECTS_DIR is /home/riobravo/freesurfer/subjects > > > Actual FREESURFER_HOME /home/riobravo/freesurfer > > > Linux localhost.localdomain 2.4.20-6smp #1 SMP Thu Feb 27 09:59:40 EST > > > 2003 i686 i686 i386 GNU/Linux > > > ######################################## > > > program versions used > > > $Id: recon-all-nmr,v 1.104 2005/09/07 15:59:46 greve Exp $ > > > $Id: mri_motion_correct2,v 1.9 2004/12/14 03:37:42 greve Exp $ > > > mri_convert --version > > > $ > > > $Header: /software/source/minc/cvsroot/minc/progs/rawtominc/rawtominc.c,v > > > 6.3 1999/10/19 14:45:31 neelin Exp $ > > > minctracc.c > > > $Header: > > > /software/source/registration/mni_autoreg/minctracc/Main/minctracc.c,v > > > 96.3 2000/03/15 08:42:41 stever Exp $ > > > $Header: > > > /software/source/minc/cvsroot/minc/progs/mincresample/mincresample.c,v > > > 6.2 1999/10/19 14:45:27 neelin Exp $ > > > $Header: > > > /software/source/minc/cvsroot/minc/progs/mincaverage/mincaverage.c,v 6.1 > > > 1999/10/19 14:45:18 neelin Exp $ > > > $Id: talairach2,v 1.8 2005/09/06 13:54:17 nicks Exp $ > > > mri_convert --version > > > $ > > > # $Id: mritotal.in,v 1.10 2000/06/14 12:55:01 louis Exp $ > > > Program nu_correct, built from: > > > Package MNI N3, version 1.04, compiled by [EMAIL PROTECTED] > > > (i686-pc-linux-gnu) on 2001-08-09 at 10:52:16 > > > ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: > > > $Name: $ TimeStamp: 05/09/21-13:51:01-GMT CVS: $Id: mri_normalize.c,v > > > 1.36 2005/08/15 14:05:49 fischl Exp $ User: UNKNOWN Machine: > > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > > CompilerName: GCC CompilerVersion: 30200 > > > ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: > > > $Name: $ TimeStamp: 05/09/21-13:51:01-GMT CVS: $Id: mri_watershed.cpp,v > > > 1.34 2005/08/15 14:05:17 fischl Exp $ User: UNKNOWN Machine: > > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > > CompilerName: GCC CompilerVersion: 30200 > > > ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: > > > $Name: $ TimeStamp: 05/09/21-13:51:01-GMT CVS: $Id: mri_segment.c,v 1.27 > > > 2005/08/24 19:48:08 fischl Exp $ User: UNKNOWN Machine: > > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > > CompilerName: GCC CompilerVersion: 30200 > > > ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: > > > $ TimeStamp: 05/09/21-13:51:01-GMT CVS: $Id: mri_fill.c,v 1.95 2005/09/05 > > > 20:49:50 fischl Exp $ User: UNKNOWN Machine: localhost.localdomain > > > Platform: Linux PlatformVersion: 2.4.20-6smp CompilerName: GCC > > > CompilerVersion: 30200 > > > ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: > > > $Name: $ TimeStamp: 05/09/21-13:51:01-GMT CVS: $Id: mri_tessellate.c,v > > > 1.24 2005/08/18 16:19:10 fischl Exp $ User: UNKNOWN Machine: > > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > > CompilerName: GCC CompilerVersion: 30200 > > > ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: > > > $Name: $ TimeStamp: 05/09/21-13:51:01-GMT CVS: $Id: mris_smooth.c,v 1.13 > > > 2005/08/15 14:22:53 fischl Exp $ User: UNKNOWN Machine: > > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > > CompilerName: GCC CompilerVersion: 30200 > > > ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: > > > $Name: $ TimeStamp: 05/09/21-13:51:01-GMT CVS: $Id: mris_inflate.c,v > > > 1.28 2005/08/15 14:23:37 fischl Exp $ User: UNKNOWN Machine: > > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > > CompilerName: GCC CompilerVersion: 30200 > > > ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: > > > $Name: $ TimeStamp: 05/09/21-13:51:01-GMT CVS: $Id: mris_sphere.c,v 1.31 > > > 2005/08/15 14:24:12 fischl Exp $ User: UNKNOWN Machine: > > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > > CompilerName: GCC CompilerVersion: 30200 > > > ProgramName: mris_fix_topology ProgramArguments: -all-info > > > ProgramVersion: $Name: $ TimeStamp: 05/09/21-13:51:01-GMT CVS: $Id: > > > mris_fix_topology.c,v 1.31 2005/08/15 14:28:43 fischl Exp $ User: UNKNOWN > > > Machine: localhost.localdomain Platform: Linux PlatformVersion: > > > 2.4.20-6smp CompilerName: GCC CompilerVersion: 30200 > > > ProgramName: mris_euler_number ProgramArguments: -all-info > > > ProgramVersion: $Name: $ TimeStamp: 05/09/21-13:51:01-GMT CVS: $Id: > > > mris_euler_number.c,v 1.4 2003/09/05 04:45:41 kteich Exp $ User: UNKNOWN > > > Machine: localhost.localdomain Platform: Linux PlatformVersion: > > > 2.4.20-6smp CompilerName: GCC CompilerVersion: 30200 > > > ProgramName: mris_make_surfaces ProgramArguments: -all-info > > > ProgramVersion: $Name: $ TimeStamp: 05/09/21-13:51:01-GMT CVS: $Id: > > > mris_make_surfaces.c,v 1.60 2005/08/22 17:47:27 fischl Exp $ User: > > > UNKNOWN Machine: localhost.localdomain Platform: Linux PlatformVersion: > > > 2.4.20-6smp CompilerName: GCC CompilerVersion: 30200 > > > ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: > > > $Name: $ TimeStamp: 05/09/21-13:51:01-GMT CVS: $Id: mris_sphere.c,v 1.31 > > > 2005/08/15 14:24:12 fischl Exp $ User: UNKNOWN Machine: > > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > > CompilerName: GCC CompilerVersion: 30200 > > > ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: > > > $Name: $ TimeStamp: 05/09/21-13:51:01-GMT CVS: $Id: mris_register.c,v > > > 1.30 2005/08/15 14:24:44 fischl Exp $ User: UNKNOWN Machine: > > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > > CompilerName: GCC CompilerVersion: 30200 > > > ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: > > > $Name: $ TimeStamp: 05/09/21-13:51:01-GMT CVS: $Id: mrisp_paint.c,v 1.6 > > > 2005/02/14 04:30:19 segonne Exp $ User: UNKNOWN Machine: > > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > > CompilerName: GCC CompilerVersion: 30200 > > > ProgramName: mri_label2label ProgramArguments: -all-info ProgramVersion: > > > $Name: $ TimeStamp: 05/09/21-13:51:01-GMT CVS: $Id: mri_label2label.c,v > > > 1.21 2004/11/16 00:35:37 greve Exp $ User: UNKNOWN Machine: > > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > > CompilerName: GCC CompilerVersion: 30200 > > > ProgramName: mris2rgb ProgramArguments: -all-info ProgramVersion: $Name: > > > $ TimeStamp: 05/09/21-13:51:01-GMT CVS: $Id: mris2rgb.c,v 1.33 2005/06/08 > > > 19:45:07 nicks Exp $ User: UNKNOWN Machine: localhost.localdomain > > > Platform: Linux PlatformVersion: 2.4.20-6smp CompilerName: GCC > > > CompilerVersion: 30200 > > > ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: > > > $Name: $ TimeStamp: 05/09/21-13:51:01-GMT CVS: $Id: mri_em_register.c,v > > > 1.50 2005/05/30 20:36:05 xhan Exp $ User: UNKNOWN Machine: > > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > > CompilerName: GCC CompilerVersion: 30200 > > > ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: > > > $Name: $ TimeStamp: 05/09/21-13:51:01-GMT CVS: $Id: mri_ca_normalize.c,v > > > 1.31 2005/08/15 14:14:22 fischl Exp $ User: UNKNOWN Machine: > > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > > CompilerName: GCC CompilerVersion: 30200 > > > ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: > > > $Name: $ TimeStamp: 05/09/21-13:51:01-GMT CVS: $Id: mri_ca_register.c,v > > > 1.34 2005/08/18 13:29:27 fischl Exp $ User: UNKNOWN Machine: > > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > > CompilerName: GCC CompilerVersion: 30200 > > > ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: > > > $Name: $ TimeStamp: 05/09/21-13:51:01-GMT CVS: $Id: mri_ca_label.c,v > > > 1.62 2005/08/18 13:29:41 fischl Exp $ User: UNKNOWN Machine: > > > localhost.localdomain Platform: Linux PlatformVersion: 2.4.20-6smp > > > CompilerName: GCC CompilerVersion: 30200 > > > ####################################### > > > GCA RB40_talairach_2005-07-20.gca > > > AvgCurvTif average.curvature.filled.buckner40.tif > > > GCS curvature.buckner40.filled.desikan_killiany.gcs > > > ####################################### > > > ~/freesurfer/subjects/Sub05 > > > Using COR format > > > --------------------------------------------- > > > MotionCor Wed Sep 21 09:51:01 EDT 2005 > > > ERROR: no data found in /home/riobravo/freesurfer/subjects/Sub05/mri/orig > > > Linux localhost.localdomain 2.4.20-6smp #1 SMP Thu Feb 27 09:59:40 EST > > > 2003 i686 i686 i386 GNU/Linux > > > recon-all exited with errors at Wed Sep 21 09:51:01 EDT 2005 > > > > > > _______________________________________________ > > > Freesurfer mailing list > > > Freesurfer@nmr.mgh.harvard.edu > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > > > > > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
