what about the probabilistic brain defacing?

Thanks

On Nov 10, 2005, at 12:25 PM, Bruce Fischl wrote:

if you use surface recons


Dale, A.M. and M.I. Sereno (1993) Improved localization of cortical
activity by combining EEG and MEG with MRI cortical surface reconstruction:
A linear approach. Journal of Cognitive Neuroscience 5:162-176.

Segonne F, Dale, AM, Busa E, Glessner M, Salvolini U, Hahn HK,
Fischl B, A Hybrid Approach to the Skull-Stripping Problem in MRI.
NeuroImage, 22, pp. 1160-1075, 2004

Dale, A.M., Fischl, Bruce, Sereno, M.I., (1999). Cortical Surface-Based
Analysis I: Segmentation and Surface Reconstruction. NeuroImage
9(2):179-194

Fischl, Bruce, Sereno, M.I., Dale, A.M., (1999). Cortical Surface-Based
Analysis II: Inflation, Flattening, and a Surface-Based Coordinate System.
NeuroImage 9(2):195-207

Fischl, Bruce, Liu, Arthur, and Dale, A.M., (2001). Automated Manifold
Surgery: Constructing Geometrically Accurate and Topologically Correct
Models of the Human Cerebral Cortex. IEEE Transactions on Medical Imaging,
20(1):70-80


if you do inter-subject spherical averaging

Fischl, Bruce, Sereno, M.I., Tootell, R.B.H., and Dale, A.M., (1999).
High-resolution inter-subject averaging and a coordinate system for the
cortical surface. Human Brain Mapping, In Press


if you do a thickness study


Fischl, Bruce, and Dale, A.M., (2000). Measuring the Thickness of the Human
Cerebral Cortex from Magnetic Resonance Images. Proceedings of the National
Academy of Sciences, 97:11044-11049.


if you use cortical parcellations


Fischl B, van der Kouwe A, Destrieux C, Halgren E, Ségonne F,
Salat DH, Busa E, Seidman LJ, Goldstein J, Kennedy D, Caviness V, Makris
N, Rosen B, Dale, AM Automatically Parcellating the Human Cerebral
Cortex. Cerebral Cortex, 2004; 14:11-22.



if you do subcortical segmentation

Fischl B, Salat DH, van der Kouwe AJW, Makris N, Ségonne F, Dale
AM. Sequence-Independent Segmentation of Magnetic Resonance Images.
NeuroImage 23 Suppl 1, S69-84.

Fischl B, Salat D, Busa E, Albert M, Dieterich M, Haselgrove C,
van der Kouwe A, Killiany R, Kennedy D, Klaveness S, Montillo A, Makris
N, Rosen B, Dale A.M.. Whole brain segmentation. Automated labeling of
neuroanatomical structures in the human brain. Neuron. 2002; 33(3):
341-355.





Hi All,
If I wanted to reference freesurfer, what would the appropriate reference be now that the "manual" is now a wiki?

Thanks,
Tracy

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<x-tad-bigger>Tracy Wang
Research Assistant
Cognitive Neuroscience Laboratory

Washington University
Department of Psychology, Campus Box 1125
One Brookings Drive
St. Louis MO 63130-4899
314-935-5019
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