Antao, Which platform release of Freesurfer did you install? The dev rh9 release or the dev centos4 release? I think for the Fedora 4 platform, you will want the dev centos4 release, which uses the libstdc++.so.6 libs.
Nick > Hi, > > I installed freesurfer in a new machine (Fedora 4) and when I run > -skullstrip, an error message appeared as the following. It seems a error > from a library libstdc++.so.5. In this machine, libstdc++.so.6 exists. > Can someone tell me how to fix the problem > > Thanks, > > Antao > > [EMAIL PROTECTED] subjects]$ recon-all -skullstrip -s FT035-1-1/ > INFO: SUBJECTS_DIR is /home/antao/freesurfer/subjects > Actual FREESURFER_HOME /home/antao/freesurfer > Linux localhost.localdomain 2.6.11-1.1369_FC4smp #1 SMP Thu Jun 2 > 23:08:39 EDT 2005 i686 i686 i386 GNU/Linux > ######################################## > program versions used > $Id: recon-all-nmr,v 1.114 2005/09/28 21:38:23 nicks Exp $ > $Id: mri_motion_correct2,v 1.9 2004/12/14 03:37:42 greve Exp $ > mri_convert --version > $ > minctracc.c > $Id: talairach2,v 1.8 2005/09/06 13:54:17 nicks Exp $ > mri_convert --version > $ > # $Id: mritotal.in,v 1.12 2004/02/12 05:55:18 rotor Exp $ > Program nu_correct, built from: > Package MNI N3, version 1.10, compiled by [EMAIL PROTECTED] > (i686-pc-linux-gnu) on 2005-08-31 at 17:44:16 > ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: > $Name: $ TimeStamp: 05/11/18-11:16:48-GMT CVS: $Id: mri_normalize.c,v > 1.37 2005/10/03 01:15:35 fischl Exp $ User: UNKNOWN Machine: > localhost.localdomain Platform: Linux PlatformVersion: > 2.6.11-1.1369_FC4smp CompilerName: GCC CompilerVersion: 30200 > mri_watershed: error while loading shared libraries: libstdc++.so.5: > cannot open shared object file: No such file or directory > ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: > $Name: $ TimeStamp: 05/11/18-11:16:48-GMT CVS: $Id: mri_segment.c,v 1.27 > 2005/08/24 19:48:08 fischl Exp $ User: UNKNOWN Machine: > localhost.localdomain Platform: Linux PlatformVersion: > 2.6.11-1.1369_FC4smp CompilerName: GCC CompilerVersion: 30200 > ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: > $ TimeStamp: 05/11/18-11:16:48-GMT CVS: $Id: mri_fill.c,v 1.96 2005/09/20 > 21:22:12 xhan Exp $ User: UNKNOWN Machine: localhost.localdomain > Platform: Linux PlatformVersion: 2.6.11-1.1369_FC4smp CompilerName: GCC > CompilerVersion: 30200 > ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: > $Name: $ TimeStamp: 05/11/18-11:16:48-GMT CVS: $Id: mri_tessellate.c,v > 1.24 2005/08/18 16:19:10 fischl Exp $ User: UNKNOWN Machine: > localhost.localdomain Platform: Linux PlatformVersion: > 2.6.11-1.1369_FC4smp CompilerName: GCC CompilerVersion: 30200 > ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: > $Name: $ TimeStamp: 05/11/18-11:16:48-GMT CVS: $Id: mris_smooth.c,v 1.13 > 2005/08/15 14:22:53 fischl Exp $ User: UNKNOWN Machine: > localhost.localdomain Platform: Linux PlatformVersion: > 2.6.11-1.1369_FC4smp CompilerName: GCC CompilerVersion: 30200 > ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: > $Name: $ TimeStamp: 05/11/18-11:16:48-GMT CVS: $Id: mris_inflate.c,v > 1.28 2005/08/15 14:23:37 fischl Exp $ User: UNKNOWN Machine: > localhost.localdomain Platform: Linux PlatformVersion: > 2.6.11-1.1369_FC4smp CompilerName: GCC CompilerVersion: 30200 > ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: > $Name: $ TimeStamp: 05/11/18-11:16:48-GMT CVS: $Id: mris_sphere.c,v 1.31 > 2005/08/15 14:24:12 fischl Exp $ User: UNKNOWN Machine: > localhost.localdomain Platform: Linux PlatformVersion: > 2.6.11-1.1369_FC4smp CompilerName: GCC CompilerVersion: 30200 > ProgramName: mris_fix_topology ProgramArguments: -all-info > ProgramVersion: $Name: $ TimeStamp: 05/11/18-11:16:48-GMT CVS: $Id: > mris_fix_topology.c,v 1.32 2005/09/12 18:07:35 segonne Exp $ User: > UNKNOWN Machine: localhost.localdomain Platform: Linux PlatformVersion: > 2.6.11-1.1369_FC4smp CompilerName: GCC CompilerVersion: 30200 > ProgramName: mris_euler_number ProgramArguments: -all-info > ProgramVersion: $Name: $ TimeStamp: 05/11/18-11:16:48-GMT CVS: $Id: > mris_euler_number.c,v 1.4 2003/09/05 04:45:41 kteich Exp $ User: UNKNOWN > Machine: localhost.localdomain Platform: Linux PlatformVersion: > 2.6.11-1.1369_FC4smp CompilerName: GCC CompilerVersion: 30200 > ProgramName: mris_make_surfaces ProgramArguments: -all-info > ProgramVersion: $Name: $ TimeStamp: 05/11/18-11:16:48-GMT CVS: $Id: > mris_make_surfaces.c,v 1.60 2005/08/22 17:47:27 fischl Exp $ User: > UNKNOWN Machine: localhost.localdomain Platform: Linux PlatformVersion: > 2.6.11-1.1369_FC4smp CompilerName: GCC CompilerVersion: 30200 > ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: > $Name: $ TimeStamp: 05/11/18-11:16:48-GMT CVS: $Id: mris_sphere.c,v 1.31 > 2005/08/15 14:24:12 fischl Exp $ User: UNKNOWN Machine: > localhost.localdomain Platform: Linux PlatformVersion: > 2.6.11-1.1369_FC4smp CompilerName: GCC CompilerVersion: 30200 > ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: > $Name: $ TimeStamp: 05/11/18-11:16:48-GMT CVS: $Id: mris_register.c,v > 1.30 2005/08/15 14:24:44 fischl Exp $ User: UNKNOWN Machine: > localhost.localdomain Platform: Linux PlatformVersion: > 2.6.11-1.1369_FC4smp CompilerName: GCC CompilerVersion: 30200 > ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: > $Name: $ TimeStamp: 05/11/18-11:16:48-GMT CVS: $Id: mrisp_paint.c,v 1.6 > 2005/02/14 04:30:19 segonne Exp $ User: UNKNOWN Machine: > localhost.localdomain Platform: Linux PlatformVersion: > 2.6.11-1.1369_FC4smp CompilerName: GCC CompilerVersion: 30200 > ProgramName: mri_label2label ProgramArguments: -all-info ProgramVersion: > $Name: $ TimeStamp: 05/11/18-11:16:48-GMT CVS: $Id: mri_label2label.c,v > 1.21 2004/11/16 00:35:37 greve Exp $ User: UNKNOWN Machine: > localhost.localdomain Platform: Linux PlatformVersion: > 2.6.11-1.1369_FC4smp CompilerName: GCC CompilerVersion: 30200 > ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: > $Name: $ TimeStamp: 05/11/18-11:16:48-GMT CVS: $Id: mri_em_register.c,v > 1.50 2005/05/30 20:36:05 xhan Exp $ User: UNKNOWN Machine: > localhost.localdomain Platform: Linux PlatformVersion: > 2.6.11-1.1369_FC4smp CompilerName: GCC CompilerVersion: 30200 > ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: > $Name: $ TimeStamp: 05/11/18-11:16:48-GMT CVS: $Id: mri_ca_normalize.c,v > 1.31 2005/08/15 14:14:22 fischl Exp $ User: UNKNOWN Machine: > localhost.localdomain Platform: Linux PlatformVersion: > 2.6.11-1.1369_FC4smp CompilerName: GCC CompilerVersion: 30200 > ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: > $Name: $ TimeStamp: 05/11/18-11:16:48-GMT CVS: $Id: mri_ca_register.c,v > 1.35 2005/09/26 21:34:29 fischl Exp $ User: UNKNOWN Machine: > localhost.localdomain Platform: Linux PlatformVersion: > 2.6.11-1.1369_FC4smp CompilerName: GCC CompilerVersion: 30200 > ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: > $Name: $ TimeStamp: 05/11/18-11:16:48-GMT CVS: $Id: mri_ca_label.c,v > 1.62 2005/08/18 13:29:41 fischl Exp $ User: UNKNOWN Machine: > localhost.localdomain Platform: Linux PlatformVersion: > 2.6.11-1.1369_FC4smp CompilerName: GCC CompilerVersion: 30200 > ####################################### > GCA RB40_talairach_2005-07-20.gca > AvgCurvTif average.curvature.filled.buckner40.tif > GCS curvature.buckner40.filled.desikan_killiany.gcs > ####################################### > ~/freesurfer/subjects/FT035-1-1 > Using mgz format > --------------------------------------------- > Skull Stripping Fri Nov 18 03:16:49 PST 2005 > /home/antao/freesurfer/subjects/FT035-1-1/mri > mri_watershed T1.mgz brain.mgz > mri_watershed: error while loading shared libraries: libstdc++.so.5: > cannot open shared object file: No such file or directory > ERROR: mri_watershed exited with non-zero status > Linux localhost.localdomain 2.6.11-1.1369_FC4smp #1 SMP Thu Jun 2 > 23:08:39 EDT 2005 i686 i686 i386 GNU/Linux > recon-all exited with errors at Fri Nov 18 03:16:49 PST 2005 > [EMAIL PROTECTED] subjects]$ > [EMAIL PROTECTED] subjects]$ > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
