Hi Gabe,
What version of freesurfer are you using? The -autorecon-all,
-autorecon1, and -i flags should work with a current version - but are
relatively new. If you are using an older version these flags will not
work.
Could you also send the specific command line and error message you are
receiving. When reporting bugs it's really helpful if you included some
pertinent information so we can better help you:
https://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
Thanks,
Jenni
On Mon, 27 Feb 2006, Gabe Castillo wrote:
Hello,
I am new to using freesurfer. I have installed it successfully and am
attempting to go through the tutorial. The tutorial seems to be out of
date. I am at the "Data Conversion" step of the tutorial with the
tutorial_subjs directory from the gzipped buckner_data tarball. If I try
to run "recon-all -i 014-anon/001.dcm -i 015-anon/001.dcm -s anon" it
complains about the "-i" flag. It also complained about the
"-autorecon-all" and "-autrecon1" flags. Looking through the usage output,
I'm guessing that these have been replaced by "-all" and "-stage1"
respectively. What has the "-i" flag been changed too. Forgive my
ignorance, if anybody has a changelog or can point me to one, I'd be happy
to dig around for this info.
Thanks,
Gabe Castillo _______________________________________________
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