Xander, I'm glad its working for you. I'm not sure why it did not work as-is, because the GSL library is included with the distribution (in $FREESURFER_HOME/lib/gsl) and the DYLD_LIBRARY_PATH is setup to point to it. I do need to figure-out why the hard-coded path '/usr/pubsw/packages' is shown by otool, but if its working now, then good.
Nick On Wed, 2006-04-05 at 09:17 -0500, Xander Meadow wrote: > > > ______________________________________________________________________ > > Hi Nick, > > Just wanted to let you know that Anthony has tried mri_watershed and > after installing the gsl binary everything seems to work fine. Thank > you for everything. > > >Xander > > On Apr 4, 2006, at 4:25 PM, Xander Meadow wrote: > > Hi Nick, > > I tried running mri_watershed on Anthony's computer today and > got a different error from last time. I got the following > error: > > % freesurfer/bin/mri_watershed > dyld: freesurfer/bin/mri_watershed can't open > library: /usr/pubsw/packages/gsl/current/lib/libgsl.0.dylib > (No such file or directory, errno = 2) > Trace/BPT trap > > So I installed gsl and gsl-shlibs, and I've gotten > mri_watershed to work for me. I will have Anthony and then > another user try it out to see if installing gsl fixed the > issue and let you know. Thank you. > > >Xander > > On Apr 4, 2006, at 4:05 PM, Nick Schmansky wrote: > > Anthony, > > I don't know what to recommend. I cannot seem to find > this symbol > defined anywhere (even Googling it). The panther > distribution has worked > for two other people (that i know of) outside of MGH, > so I'm not sure > what I can suggest. The 'otool' output looks correct. > > If I can think of any other debugging techniques to > try, I will send > them along. > > Nick > > > On Mon, 2006-04-03 at 14:06 -0500, Anthony Steven Dick > wrote: > Hi Nick-- > > I'm responding on behalf of Xander (our > computer tech): > > [serge:NL-GCS/subjects/freesurfer_3.0.1] adick > % otool -L `which > mri_watershed` > > /Applications/freesurfer/bin//mri_watershed: > > /usr/pubsw/packages/gsl/current/lib/libgsl.0.dylib > (compatibility > version 8.0.0, current version 8.0.0) > > /usr/pubsw/packages/gsl/current/lib/libgslcblas.0.dylib (compatibility > version 1.0.0, current version 1.0.0) > /usr/lib/libz.1.dylib (compatibility version > 1.0.0, current version 1.2.3) > /usr/lib/libSystem.B.dylib (compatibility > version 1.0.0, current version > 88.1.5) > /usr/lib/libstdc++.6.dylib (compatibility > version 7.0.0, current version > 7.3.0) > /usr/lib/libgcc_s.1.dylib (compatibility > version 1.0.0, current version > 1.0.0) > /usr/lib/libmx.A.dylib (compatibility version > 1.0.0, current version 92.0.0) > > Anthony > > > Nick Schmansky wrote: > Can you send me the output of: > > otool -L `which mri_watershed` > > > > On Mon, 2006-04-03 at 13:34 -0500, > [EMAIL PROTECTED] wrote: > > Hi, > > I just downloaded and > installed from: > > > http://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer-Darwin-panther- > stable-pub-v3.0.1-full.dmg > > And installed Freesurfer. > Most of the apps have worked > without a problem, > however mri_watershed yields > the following error: > > dyld: mri_watershed Undefined > symbols: > _acns > Trace/BPT trap > > I have redowndloaded the above > package and tried to extract > mri_watershed, in > case I just got a corrupted > binary, but each time I do so > I get the same errors. > My machine is running MAC OS X > 10.3.9. Please let me know if > there is any fix I > can do for this error? Thank > you very much. > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
