On 4/25/06, Doug Greve <[EMAIL PROTECTED]> wrote:
Sorry, what's your command-line again?
Jenn Segawa wrote:Hello all,
I had the same error as this previous post, but after the suggested fix, I'm getting the
following matlab output/error messages. Does anyone know what I'm doing
wrong?
Thanks so much,
Jenn
%-------------------------------------------------
Parsing Arguments
RescaleTarget = 1000
Checking Parameters
AutoStimDur: 0
StimDur: Number of Runs: 3
Input Volume List
1 014/fmc
2 016/fmc
3 017/fmc
Input Pardigm File List
1 014/parfile.par
2 016/parfile.par
3 017/parfile.par
Output Volume funcanal/h
F Omnibus Volume funcanal/omnibus/f
Sig Omnibus Volume funcanal/omnibus/fsig
TR 2.870000
TER 2.870000
Total Window 0
PreStim Window 0
Remove Baseline 1
Remove Trend 0
Remove QTrend 0
Rescale Target 1000
nSkip 0
InPlane Res 3.125
FWHM 0
Hanning Radius 0
Time Offset 0
GammaFit 0
GammaFit Alpha: 2
SPM HRF: -1
Seg Brain/Air 1
SynthSeed 0
firstslice 0
nslices 27
nyqreg 0
SynthSeed = 0
Conditions Found (6): 1 2 3 4 5 6
Run 1: 72 72 72 72 36 36
Run 2: 72 72 72 72 36 36
Run 3: 72 72 72 72 36 36
Slice 0, 0.000159 --------------
First Pass (Accumulation), 0.024409
Run 1/3, 0.024782
Excluding 0 Points:
Run 2/3, 5.67758
Excluding 0 Points:
Run 3/3, 11.2836
Excluding 0 Points:
Second Pass (Residual Error Estimation), 16.6096
Paradigm Condition: 33.8741
Var Reduction Range: 65.7977 85.9199 97.4559
Computing hhat
Run 1/3, 16.6695
Excluding 0 Points:
Run 2/3, 17.4337
Excluding 0 Points:
Run 3/3, 18.1927
Excluding 0 Points:
Saving data to funcanal/h_000.bfloat
Saving offset to funcanal/h-offset_000.bfloat
??? Error using ==> .*
Matrix dimensions must agree.
Error in ==> /usr/local/freesurfer/stable/fsfast/toolbox/fast_selxavg.m
On line 657 ==> F = sign(qsum) .* Fnum ./ Fden;
>> ??? Undefined function or variable 'r'.
>> quiting matlab
------------------------------------------
ERROR: fast_selxavg() failed\n
ERROR (<subject_dir>/<subject>): selxavg failed
%----------------------------------------------------------
On 4/10/06, Doug Greve < [EMAIL PROTECTED]> wrote:
>
> Add the following lines to your startup.m file
>
> FSH = getenv('FREESURFER_HOME');
> fshmatlab = sprintf('%s/matlab',FSH);
> path(path,fshmatlab);
> clear fshmatlab;
>
>
> Paymon Hosseini wrote:
>
> > hi
> >
> > i am going over the fsfast tutorial. i have completed all steps up to
> > "FsFastTutorial/905 Average session-level data by condition"
> >
> >
>
on_2dlevel_20data_20by_20condition
> >
> >
> >
> > when i run "selxavg-sess -sf sessid -df sesspar -analysis sem_assoc",
> > i get the following error:
> >
> > "
> > ??? Undefined function or variable 'MRIread'.
> >
> > Error in ==> /usr/local/freesurfer/stable/fsfast/toolbox/fast_selxavg.m
> > On line 160 ==> rstd = MRIread(instem,1);
> >
> >>> ??? Undefined function or variable 'r'.
> >>
> >
> >>> quiting matlab
> >>
> > ------------------------------------------
> > ERROR: fast_selxavg() failed\n
> > ERROR (/autofs/space/engram_012/users/pman/bert-functional): selxavg
> > failed
> > "
> >
> > can you please tell me why i am getting this error?
> >
> > thanks
> > paymon hosseini
> > _______________________________________________
> > Freesurfer mailing list
> > Freesurfer@nmr.mgh.harvard.edu
> >
> >
>
> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> [EMAIL PROTECTED]
> Phone Number: 617-724-2358
> Fax: 617-726-7422
>
> In order to help us help you, please follow the steps in:
> surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer-- Douglas N. Greve, Ph.D. MGH-NMR Center [EMAIL PROTECTED] Phone Number: 617-724-2358 Fax: 617-726-7422In order to help us help you, please follow the steps in: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
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