So my images come off the scanner as DICOM. Steps For Both: 1) Convert DICOM to ANALYZE 2) Align and Average the scans
Steps For Broken: 3) Convert to minc to create a brain mask and do some normalization 4) Use mincedit to fake 1.0mm voxels (mine are actually 0.5 since I am doing monkeys) 5) Use mri_convert to convert MNC to MGZ Steps for Working: 3) Convert Analyze to AFNI 4) Use 3drefit (AFNI) to fake 1.0mm voxels 5) Use mri_convert to convert BRIK to MGZ -Eric -----Original Message----- From: Bruce Fischl [mailto:[EMAIL PROTECTED] Sent: Tue 8/1/2006 2:27 PM To: Faden, Eric (NIH/NIMH) [F] Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] Vanishing Control Points (Updated: MNC to MGZ problems) can you give us details about how you did the conversion? On Tue, 1 Aug 2006, Faden, Eric (NIH/NIMH) [F] wrote: > Upon further investigation it seems to be something wrong with my conversion > from MNC to MGZ. I have tried the exact same scan going through Analyze to > MGZ and the control points work fine. Has anyone had any issues converting > between mnc and mgz? > > -Eric > > -----Original Message----- > From: Faden, Eric (NIH/NIMH) [F] > Sent: Tue 8/1/2006 9:49 AM > To: freesurfer@nmr.mgh.harvard.edu > Subject: [Freesurfer] Vanishing Control Points > > I am currently running 3.0.3 on RedHat EL v4. Whenever I load up a brain and > try to draw control points I can see a little green cross about 1 voxel down > and to the right of the red cross, but as soon as I move the red cross they > vanish and I can no longer see them. FreeSurfer is saving the points to > tmp/control.dat though they just do not seem to display. Any ideas why? > > -Eric > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
