Re: [Freesurfer] subcortical segmentation

[Bruce Fischl]

Hi Abel,

yes, they will change the volume. You can manually correct them in the 
aseg.mgz if you want.

cheers,
Bruce
On Fri, 18 Apr 2008, abel cruz vadell wrote:

Hello

I’m doing a thalamus volumetric analysis between two
populations and checking the thalamus segmentation I
found some pixels classified as white matter
hipointensities inside the thalamus. Do they affect
the volume measure of this structure reported by
FreeSurfer. In the positive case, how can I fix that
problem?
I attached an image.

Thanks

Abel



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