Thank you very much, that solved my problem. However, though I can now
write .tif files, freesurfer does not seem to want to read them (when
using mris_register):
[Macintosh-10:/Volumes/Data/monkey_surface_data] work%
mris_make_template rh sphere bu_edited monk_temp0.tif
creating new parameterization...
processing subject bu_edited (1 of 1)
reading spherical surface /Volumes/Data/monkey_surface_data/bu_edited/
surf/rh.sphere...
curvature mean = 0.000, std = 1.000
computing parameterization for surface /Volumes/Data/
monkey_surface_data/bu_edited/surf/rh.inflated.H...
curvature mean = 0.000, std = 0.592
computing parameterization for surface /Volumes/Data/
monkey_surface_data/bu_edited/surf/rh.sulc...
curvature mean = -0.100, std = 1.787
computing parameterization for surface /Volumes/Data/
monkey_surface_data/bu_edited/surf/rh.smoothwm...
writing updated template with 1 subjects to monk_temp0.tif...
[Macintosh-10:/Volumes/Data/monkey_surface_data] work% mris_register
$SUBJECTS_DIR/bu_edited/surf/rh.sphere $SUBJECTS_DIR/monk_temp0.tif
$SUBJECTS_DIR/bu_edited/surf/rh.sphere.reg
$Id: mris_register.c,v 1.48 2007/07/19 15:58:50 fischl Exp $
$Id: mrisurf.c,v 1.557.2.13 2008/05/23 00:06:05 nicks Exp $
reading surface from /Volumes/Data/monkey_surface_data/bu_edited/surf/
rh.sphere...
reading template parameterization from /Volumes/Data/
monkey_surface_data/monk_temp0.tif...
/Volumes/Data/monkey_surface_data/monk_temp0.tif: Deflate compression
support is not configured.
TiffReadImage: TIFFReadScanline returned error
No such file or directory
MRISPread(/Volumes/Data/monkey_surface_data/monk_temp0.tif): could not
open file
No such file or directory
mris_register: could not open template file /Volumes/Data/
monkey_surface_data/monk_temp0.tif
No such file or directory
Is there an updated 'mris_register' binary too that I could get a hold
of? Thanks.
- Jan Kalkus
On Jul 8, 2008, at 6:51 PM, Nick Schmansky wrote:
Jan,
It appears that the libtiff used to build mris_make_template did not
have deflate (zip) support. An updated binary can be downloaded from
here:
wget
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/fsdev/nicks/stable/macintel/mris_make_template
the wget command is one line. run this command in
the /Applications/freesurfer/bin directory, then type:
chmod a+x /Applications/freesurfer/bin/mris_make_template
Nick
On Tue, 2008-07-01 at 11:27 -0400, Jan Kalkus wrote:
Hi everyone,
I'm trying to make a monkey template using mris_make_template. So
far, every time I run the mris_make_template, I get this error:
[jkalkus:~] work% /Volumes/Data/monkey_surface_data/mris_make
creating new parameterization...
processing subject bu_edited (1 of 1)
reading spherical surface /Volumes/Data/monkey_surface_data//
bu_edited/
surf/rh.sphere...
curvature mean = 0.000, std = 1.000
computing parameterization for surface /Volumes/Data/
monkey_surface_data//bu_edited/surf/rh.inflated.H...
curvature mean = 0.000, std = 0.592
computing parameterization for surface /Volumes/Data/
monkey_surface_data//bu_edited/surf/rh.sulc...
curvature mean = -0.100, std = 1.787
computing parameterization for surface /Volumes/Data/
monkey_surface_data//bu_edited/surf/rh.smoothwm...
writing updated template with 1 subjects to monk_temp0.tif...
monk_temp0.tif: Deflate compression support is not configured.
TiffWrite: TIFFWriteScanline returned error
I am working on an intel MacBook with OS X 10.5.4 and I'm running
freesurfer-Darwin-leopard-i686-stable-pub-v4.0.5. Has anyone else
encountered this problem? Does anyone have any suggestions? Thanks
- Jan Kalkus
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
On Jul 8, 2008, at 6:51 PM, Nick Schmansky wrote:
Jan,
It appears that the libtiff used to build mris_make_template did not
have deflate (zip) support. An updated binary can be downloaded from
here:
wget
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/fsdev/nicks/stable/macintel/mris_make_template
the wget command is one line. run this command in
the /Applications/freesurfer/bin directory, then type:
chmod a+x /Applications/freesurfer/bin/mris_make_template
Nick
On Tue, 2008-07-01 at 11:27 -0400, Jan Kalkus wrote:
Hi everyone,
I'm trying to make a monkey template using mris_make_template. So
far, every time I run the mris_make_template, I get this error:
[jkalkus:~] work% /Volumes/Data/monkey_surface_data/mris_make
creating new parameterization...
processing subject bu_edited (1 of 1)
reading spherical surface /Volumes/Data/monkey_surface_data//
bu_edited/
surf/rh.sphere...
curvature mean = 0.000, std = 1.000
computing parameterization for surface /Volumes/Data/
monkey_surface_data//bu_edited/surf/rh.inflated.H...
curvature mean = 0.000, std = 0.592
computing parameterization for surface /Volumes/Data/
monkey_surface_data//bu_edited/surf/rh.sulc...
curvature mean = -0.100, std = 1.787
computing parameterization for surface /Volumes/Data/
monkey_surface_data//bu_edited/surf/rh.smoothwm...
writing updated template with 1 subjects to monk_temp0.tif...
monk_temp0.tif: Deflate compression support is not configured.
TiffWrite: TIFFWriteScanline returned error
I am working on an intel MacBook with OS X 10.5.4 and I'm running
freesurfer-Darwin-leopard-i686-stable-pub-v4.0.5. Has anyone else
encountered this problem? Does anyone have any suggestions? Thanks
- Jan Kalkus
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
