Thank you Doug, I have found the summary file. So the final results that I have
are the thickness data of the Mask.
What we wanted to find out was more how can we run the statistics not on the
whole brain or one hemisphere, but only on one Mask (for i.e. a 3D Mask from
FSL). the transformation of 3D to surface ?
Thank you for your help,
Alex.
________________________________
Von: Doug Greve <[EMAIL PROTECTED]>
An: Alexandru Hanganu <[EMAIL PROTECTED]>
CC: FS Mailing List <Freesurfer@nmr.mgh.harvard.edu>
Gesendet: Montag, den 8. Dezember 2008, 19:41:52 Uhr
Betreff: Re: [Freesurfer] Statistic analysing for a mask
what's your cmd? You need to make sure to add --in lh.thickness to get
thickness in the summary file
Alexandru Hanganu wrote:
Thank you Nick, and Doug for your answers. I used both "--reshape" flag and
"--noreshape" flag and the results
after "mri_segstats" were in
both cases:
.
.
.
Voxel Volume is 1 mm^3
Generating list of segmentation ids
Found 2 segmentations
Computing statistics for each segmentation
0 0 134504 134504
1 1 29338 29338
Reporting on 2 segmentations
So I understand that these are the thickness data of the mask I used.
Are these data in mm ? Because when using "mris_anatomical_stats" command line
to see the thickness - the data is in mm, and is very different.
Sincerely,
Alex.
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