Hello!
I just setup "freesurfer-Linux-centos4-stable-pub-v4.4.0" on linux
2.6.21-1.3194.fc7 . to test freesurfer, I successfully run "recon-all -s bert
-autorecon1" and "recon-all -s bert -autorecon3", but "recon-all -s bert
-autorecon2", exited with ERRORS,as follows:
"writing output transformation to transforms/talairach.m3z...
registration took 5 hours, 40 minutes and 53 seconds.
#--------------------------------------
#...@# CA Reg Inv Tue Jun 30 08:14:28 CST 2009
/home/whb/soft/freesurfer/subjects/bert/mri
mri_ca_register -invert-and-save transforms/talairach.m3z
Loading, Inverting, Saving, Exiting ...
Reading transforms/talairach.m3z
zcat transforms/talairach.m3z
Inverting GCAM
Saving inverse
#--------------------------------------
#...@# Remove Neck Tue Jun 30 08:16:04 CST 2009
mri_remove_neck -radius 25 nu.mgz transforms/talairach.m3z
/home/whb/soft/freesurfer/average/RB_all_2008-03-26.gca nu_noneck.mgz
erasing everything more than 25 mm from possible brain
reading atlas '/home/whb/soft/freesurfer/average/RB_all_2008-03-26.gca'...
reading input volume 'nu.mgz'...
reading transform 'transforms/talairach.m3z'...
zcat transforms/talairach.m3z
removing structures at least 25 mm from brain...
11097896 nonbrain voxels erased
writing output to nu_noneck.mgz...
mghWrite(nu_noneck.mgz, -1): could not open file
ERROR: opening pipe gzip -f -c > nu_noneck.mgz, errno = 12
Cannot allocate memory
Linux localhost.localdomain 2.6.21-1.3194.fc7 #1 SMP Wed May 23 22:35:01 EDT
2007
i686 i686 i386 GNU/Linux
recon-all exited with ERRORS at Tue Jun 30 08:17:59 CST 2009"
I don't know what's wrong. would you like to help me?
thanks advance!
Hai-bao wang
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