sounds like the annotation file is corrupted. Can you load it in tksurfer? On Fri, 14 Aug 2009, Rutvik Desai wrote:
> We get the following error on one subject when running > mris_anatomical_stats. The same command workson other subjects who were > generated the same way. Using > freesurfer-Darwin-tiger-i686-stable-pub-v3.0.5, > also tried freesurfer-Linux-rh9-stable-pub-v3.0.5. No heavy processes were > running on the machine > that would prevent memory allocation. > > thanks, > Rutvik > > --------------------- > > % mris_anatomical_stats -a ep.1071/label/lh.aparc.annot -b -i 0.5 8 -f > ep.1071.lh.stats ep.1071 lh > > computing statistics for each annotation in ep.1071/label/lh.aparc.annot. > > only considering thicknesses in the range [0.5,8.0]. > > reading volume /usr/home/possing/pub/Epilepsy/ep.1071/mri/wm.mgz... > > Talairach transform > /home/mgolovin/fs_subjects/ep.1071/mri/transforms/talairach.xfm does not > exist ... > > Loading tal xfm file > /usr/home/possing/pub/Epilepsy/ep.1071/mri/transforms/talairach.xfm > > reading input surface > /usr/home/possing/pub/Epilepsy/ep.1071/surf/lh.white... > > reading input surface /usr/home/possing/pub/Epilepsy/ep.1071/surf/lh.pial... > > reading input surface > /usr/home/possing/pub/Epilepsy/ep.1071/surf/lh.white... > > done. > > computing second fundamental form...reading colortable from annotation > file... > > CTABreadFrom: could not allocate -2 bin table > > Cannot allocate memory > > Segmentation fault (core dumped) > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
