Petr, >From what directory is the command being run? If the directory 'temp/label/' doesnt exist in that dir, it will fail. You can also just put the full pathname to the output file (arg of trglabel).
Nick On Sat, 2009-08-15 at 01:07 +0200, p.s.bjer...@studmed.uio.no wrote: > Hi, > > Have a question regarding the mri_label2label function. Trying to test it > for a subject (called "temp"). It seems to exit on writing the label file > in the subject folder. There should not be any problems with the write > permissions. Any idea? This is what I get (from command line): > > ------------------------------------------------------------------ > > [ceci...@rossetti ~]$ mri_label2label --srclabel > /home/Cecilie/cpi_cortex/old_study/Labels/wais_doss_vs_diff_lh_stg.label > --srcsubject avg_hubin --trgsubject temp --trglabel > temp/label/wais_doss_vs_diff_lh_stg.label --regmethod surface --srchemi lh > --trghemi lh > > srclabel = > /home/Cecilie/cpi_cortex/old_study/Labels/wais_doss_vs_diff_lh_stg.label > srcsubject = avg_hubin > trgsubject = temp > trglabel = temp/label/wais_doss_vs_diff_lh_stg.label > regmethod = surface > > srchemi = lh > trghemi = lh > trgsurface = white > srcsurfreg = sphere.reg > trgsurfreg = sphere.reg > usehash = 1 > Use ProjAbs = 0, 0 > Use ProjFrac = 0, 0 > > SUBJECTS_DIR is /home/Cecilie/subjects > FREESURFER_HOME is /usr/local/freesurfer_3.0.2 > Loading source label. > Found 21245 points in source label. > Starting surface-based mapping > Reading source registration > /home/Cecilie/subjects/avg_hubin/surf/lh.sphere.reg > Rescaling ... original radius = 100 > Reading target surface > /home/Cecilie/subjects/temp/surf/lh.white > Reading target registration > /home/Cecilie/subjects/temp/surf/lh.sphere.reg > Rescaling ... original radius = 100 > Building target registration hash (res=16). > INFO: found 21245 nlabel points > Performing mapping from target back to the source label > Building source registration hash (res=16). > Number of reverse mapping hits = 3907 > Checking for and removing duplicates > Writing label file temp/label/wais_doss_vs_diff_lh_stg.label > LabelWrite: saving to temp/label/wais_doss_vs_diff_lh_stg.label > mri_label2label: could not open label file > temp/label/wais_doss_vs_diff_lh_stg.label > No such file or directory > ERROR: writing label file > mri_label2label: Done > > ----------------------------------------------------------------- > > Petr > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
