You can just use tksurfer, something like tksurfer subject lh hippocampus
assuming you called it lh.hippocampus There will be a lot of warnings/errors printed to the terminal. These just have to do with the fact that the number of vertices will be different than the cortical surfaces. You can also load them into tkmedit: tkmedit subject orig.mgz lh.hippocampus -aseg to check how good the surface is. doug On Thu, 17 Sep 2009, Gonzalo Rojas Costa wrote: > Dear Douglas: > > And how can I view (render) in 3D the hippocampus that I got frok aseg.mgz > with the mri_binarize command ?... > > Sincerely, > > > Gonzalo Rojas Costa > > >> mri_binarize with --match 17 or --match 53 will do it >> >> doug >> >> Guang Zeng wrote: >>> Hi, there, >>> >>> I'd like to extract the left and right hippocampus from aseg.mgz, so >>> basically what I want is a volume where left hippocampus have value >>> (or label) 17 and right hippocampus have value (or label) 53, all the >>> other place are zero. >>> >>> How can I do it? Using mri_threshold or mri_label2vol? >>> >>> Thanks a lot! >>> >>> Guang >>> >>> >>> >>> ------------------------------------------------------------------------ >>> Hotmail: Free, trusted and rich email service. Get it now. >>> <http://clk.atdmt.com/GBL/go/171222984/direct/01/> >>> ------------------------------------------------------------------------ >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> [email protected] >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> [email protected] >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> In order to help us help you, please follow the steps in: >> surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center [email protected] Phone Number: 617-724-2358 Fax: 617-726-7422 In order to help us help you, please follow the steps in: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
