in some regions like left amygdata, the difference exceed 5% 2010-02-02
Chunhui Chen _________________ Institute of Cognitive Neuroscience and Learning Beijing Normal University Beijing, China 100875 发件人： Bruce Fischl 发送时间： 2010-01-22 12:38:11 收件人： chenchunhuichina 抄送： 主题： Re: Re: [Freesurfer] Orientation of 001.mgz versus raw dicom data no, that shouldn't matter On Fri, 22 Jan 2010, chenchunhuichina wrote: > May I ask a related question? > > My structural data are acquired in sagital view, do I have to re-orient it > before I run recon-all? In fslview, it's X axis is acturally from anterior to > posterior. > > Thanks! > > > 2010-01-22 > > > > chenchunhuichina > > > > 发件人： Bruce Fischl > 发送时间： 2010-01-22 07:06:58 > 收件人： [email protected] > 抄送： [email protected] > 主题： Re: [Freesurfer] Orientation of 001.mgz versus raw dicom data > > How do you know? It should be in the same space. > Bruce > > > > On Jan 21, 2010, at 5:01 PM, [email protected] wrote: > > > I have run the following command to create a 001.mgz file from raw > > *.dcm > > data: > > > > recon-all -s <subjid > -i <path to *.dcm data > > > > > The output 001.mgz file is not in the same native space as the > > original > > *.dcm data. Could anyone tell me what space the 001.mgz file is in? > > Does > > the above command change the orientation (i.e does it rotate/ > > translate) > > besides simply converting from .dcm to 001.mgz > > > > thanks a lot > > > > yuning > > > > > > _______________________________________________ > > Freesurfer mailing list > > [email protected] > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >
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