Krishna, How have you processed this data? Have you used any of the suggested flags and/or parameters for monkeys?
See: https://surfer.nmr.mgh.harvard.edu/fswiki/MonkeyData -- On Wed, 7 Apr 2010, Srihasam, Krishna wrote: > Hi, > > I have a (0.35 mm)^3 resolution monkey brain which I am trying to segment. I > am unable to get the frontal cortex to segment properly. My WM.mgz looks good > ( I think), but after I do "recon-all -autorecon2-wm ", the surf that gets > created has no frontal cortex. I have attached two pictures of one slice, > with generated surface overlaid on WM.mgz ( WM_Surf133.jpg) and the same > generated surface on T1 image (NU-Surf133.jpg). I tried adding control > points, I manually edited the WM.mgz and nothing works. Any help will be > appreciated.. > > > regards, > Krishna Srihasam > Postdoctoral Fellow > Livingstone Lab > 220 Longwood Avenue, WAS 232 > Boston, MA 02115 > > _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
