Can you send the log file (should be in the scripts dir). doug
[email protected] wrote: > Hi, > > I'm a newcomer to Freesurfer and I'm having problems trying to create > an average subject from a subset of our patients. I used the command > "make_average_surface --fsgd y.fsgd" with y.fsgd basically being a copy > of an old fsgd file with a few subjects deleted. The process ran for > several hours (I had to let it run over the weekend) and seemed to be > processing the 12 subjects that I wanted. However when I tried to open it > today with "tksurfer 12AboveChanceAvg lh inflated", I get the following > message: > > surfer: current subjects dir: /space/sake/3/users/inverse/subjects > surfer: not in "scripts" dir ==> using cwd for session root > surfer: session root data dir ($session) set to: > surfer: /autofs/homes/006/nitenson > ERROR: could not read header info from T1 or orig in > /space/sake/3/users/inverse/subjects/12AboveChanceAvg/mri > > I noticed that the mri folder in the new average I created only has one > mgz file (mni305.cor.mgz) while the mri folder in fsaverage has many more. > > I am currently running make_average_subject --fsgd y.fsgd, but it seems > that it's starting to produce the same results. > > What is the best way to create an average subject on which to study > functional overlays? > > Thanks, > > Adam Nitenson > Brain Genomic Lab > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center [email protected] Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
