Hi Doug, I read this on a previous email, and I already tried to run recon-all -make all. I included it in my original email, but I'll copy it here:
"I then tried to perform recon-all -make all, but got this error: *ERROR: mpr2mni305 failed, see transforms/talairach_avi.log* In the .log, I got this: *-7.5000 22.5000 15.0000 2793.2134 1Segmentation fault ERROR: 'imgreg_4dfp /usr/rapps/freesurfer/average/711-2C_as_mni_average_305 /usr/rapps/freesurfer/average/711-2B_as_mni_average_305_mask talsrcimg_g11 none talsrcimg_to_711-2C_as_mni_average_305_t4 4355' failed! status=139 ERROR: mpr2mni305 execution aborted*" Thanks, Allie On Tue, Apr 12, 2011 at 1:35 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu>wrote: > It usually means that you have a subject whose surfaces are out-of-synch. > This usually happens when you've made edits, launched recon-all, but then > then recon-all does not finish for some reason. Check the time stamps on > that subject or try running recon-all -make all -s subject > > doug > > btw, a "Segmentation Fault" is a computer term and does not have anything > to do with brain segmentation. > > Allie Rosen wrote: > >> Hi Bruce, >> >> I mean the "mris_preproc" step. >> >> Thanks, >> Allie >> >> (forgot to reply to all) >> >> On Tue, Apr 12, 2011 at 11:35 AM, Bruce Fischl < >> fis...@nmr.mgh.harvard.edu <mailto:fis...@nmr.mgh.harvard.edu>> wrote: >> >> Hi Allie, >> >> what do you mean by "trying to assemble my subjects into a single >> surface space"? >> >> thanks >> Bruce >> >> On Tue, 12 Apr 2011, Allie Rosen wrote: >> >> Hi All, >> >> Upon trying to assembly my subjects into a single surface >> space, I got the >> following error: >> >> *ERROR: number of vertices in >> /media/AMMONIS/fsSubjects/AR_normals/C42/surf/lh.thickness >> does not match >> surface (142271,140585) >> ERROR: reading curvature file >> * >> I then tried to perform recon-all -make all, but got this error: >> >> *ERROR: mpr2mni305 failed, see transforms/talairach_avi.log* >> >> In the .log, I got this: >> >> *-7.5000 22.5000 15.0000 2793.2134 1Segmentation fault >> ERROR: 'imgreg_4dfp >> /usr/rapps/freesurfer/average/711-2C_as_mni_average_305 >> /usr/rapps/freesurfer/average/711-2B_as_mni_average_305_mask >> talsrcimg_g11 >> none talsrcimg_to_711-2C_as_mni_average_305_t4 4355' failed! >> status=139 >> ERROR: mpr2mni305 execution aborted* >> >> Which is a segmentation fault. Can anyone help me fix this? >> >> Thanks, >> Allie Rosen, MSc Candidate >> Graduate Student, Department of Neurosurgery >> Toronto Western Hospital 14-327 >> 399 Bathurst St. >> University of Toronto >> >> >> >> The information in this e-mail is intended only for the person to >> whom it is >> addressed. If you believe this e-mail was sent to you in error and >> the e-mail >> contains patient information, please contact the Partners >> Compliance HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to >> you in error >> but does not contain patient information, please contact the >> sender and properly >> dispose of the e-mail. >> >> >> ------------------------------------------------------------------------ >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > >
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