Hi Bruce Believe it or not, we are running stable 5.0.0 (!). Since emailing I wised up and consulted recon all dev table for files - the first sign of trouble is in aseg.auto_noCCseg.mgz. The wm.seg.mgz is fine. I can upload a sub to incoming if you want to take a look ....
Sorry didn't check out that table before! Fred Sent from my iPad On 12 Apr 2011, at 18:28, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Fred, > > do you want to send us an example set and we'll track it down? What version > are you running? I suspect there is some old piece of code that Marty wrote > that is at fault. > > cheers, > Bruce > > > On Tue, 12 Apr 2011, Fred Dick wrote: > >> Dear all >> >> we have had some odd behavior in 4 fairly high quality datasets that have >> been very nicely normalized and deskulled with a good Talairach but then >> only half filled in wm.mgz and all surfs (to various semi-planes). >> Orientation seems correct in tkmedit as well. We were thinking that it might >> be a cutting plane problem but weren't sure how this would happen since all >> else is OK. >> >> Anyone else have this issue (and a solution?) >> >> Thanks, >> >> Fred >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
