Hi Derin, there is a know and fixed bug in mris_calc in the 5.1 release. It has difficulties with very long file names and returns a non zero exit code, which stops my script in some situations.
I'll ask Nick if he can put up a fixed version of mris_calc for download. Best, Martin On Thu, 2011-07-21 at 15:18 -0500, Derin Cobia wrote: > I received the follow error while running a set of subjects under > 'long_mris_slopes,' and wasn't able to decipher the problem. It > appears that mris_calc is not able to do the division for these files > (dividing by 0 perhaps?). Any help appreciated, here's the command > and tail end of output/error, thanks. > > > -Derin > > > > long_mris_slopes --qdec ./qdec/CH_prog.qdec.table.dat --meas > > thickness --hemi lh --do-avg --do-rate --do-pc1 --do-spc --do-stack > > --do-label --time scan_interval --qcache fsaverage > > > > > > > > > > =============================================================================== > > SUBJECT CH1840 fwhm 0 computing SPC > > > > > > mris_calc > > -o > > /disk/NIACAL_01/Trio/NMorph/PROCESSED_DATA/FREESURFER-v5.1.0/CH1840/surf/lh.long.thickness-spc.fwhm0.mgh > > ./tmp-CH1840_lh_thickness_FFrRIR/beta1.mgh div > > ./tmp-CH1840_lh_thickness_FFrRIR/beta0.mgh > > > > > > ERROR 1 : mris_calc compute sym. pct. change (spc) problem? > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
