I tried this. It is still giving the same error. Should I check my mask files?
Thanks. > The mask used to compute the global mean does not have any voxels in it > because the field of view is so small. Try running > mkbrainmask-sess -s session -nero 1 -fsd bold > Then run selxavg again. The above mkbrainmask command tells it to only > erode the mask by one voxel (the default in preproc-sess is 3 which is > removing all of them). > > doug > > > > Meryem Ayse Yucel wrote: >> Hi, >> >> Now it seems to be working with the par file but I am getting this >> error. >> Any help will be appreciated. Thanks, >> >> Meryem >> >> >> Computing compensation for resdual AR1 bias >> 1 -0.5 -0.473129 (t=0.192235) >> 2 -0.25 -0.238292 (t=1.09283) >> 3 0 -0.00411884 (t=1.27811) >> 4 0.25 0.228971 (t=2.16243) >> 5 0.5 0.459511 (t=2.33787) >> AR1 Correction M: 0.00580007 1.07178 >> Computing contrast matrices >> OLS Beta Pass >> run 1 t= 0.0 >> Global Mean Global In-Mask Mean = ??? Error using ==> mrdivide >> Matrix dimensions must agree. >> >> Error in ==> fast_selxavg3 at 399 >> RescaleFactor = flac0.inorm/gmean; >> >> >> >> >> >>> Hi, >>> >>> >>> I am trying to use selxavg3-sess function and getting this error. Below >>> is >>> the error I get. I actually have this fingertap.par file but freesurfer >>> somehow does not see it. Any help would be >>> appreciated. >>> >>> Thanks! >>> >>> Meryem Yucel >>> PMI Lab >>> >>> >>> >>> Extension format = nii.gz >>> ERROR: opening >>> /autofs/space/moe_002/users/mayucel/PROJECT/Subject20/bold/001/fingertap >>> No such file or directory >>> ??? Output argument "partype" (and maybe others) not assigned during >>> call >>> to "/usr/local/freesurfer/stable5_1_0/fsfast/toolbox/fast_ldpar4.m >>> (fast_ldpar4)". >>> >>> Error in ==> fast_ldpar4 at 45 >>> par4 = []; >>> >>> Error in ==> flac_customize at 121 >>> [par partype] = fast_ldpar4(parpath); >>> >>> Error in ==> fast_selxavg3 at 65 >>> flac0 = flac_customize(flac0); >>> >>> >>> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
