Hi,
I was wondering if I am doing something wrong when doing step 3 of the
longitudinally process.
The error I get is:
ERROR: Template/base ID cannot be the same as a time point ID
(in /shared/subjects/subjects/a-aut-v510/10022/base-tps)
Here is the environment:
-------- freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 --------
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /usr/local/freesurfer510
FSFAST_HOME /usr/local/freesurfer510/fsfast
FSF_OUTPUT_FORMAT nii.gz
SUBJECTS_DIR /usr/local/freesurfer510/subjects
MNI_DIR /usr/local/freesurfer510/mni
FSL_DIR /usr/local/fsl418
---------- FreeSurfer variables reset ----------
SUBJECTS_DIR /shared/subjects/subjects/a-aut-v510
FSLOUTPUTTYPE NIFTI_GZ
The command I am running is:
recon-all -long 10022--01-24-06--0470 10022 -all
The base-tps file is:
10022--01-24-06--0470
10022--03-14-06--0441
10022--04-14-08--0463
10022--04-25-06--0442
10022--07-25-06--0462
10022--08-26-10--0555
10022--10-21-06--0461
10022--11-20-08--0412
The <tpNid> is: 10022--01-24-06--0470
The <templateid> is: 10022
I am trying to follow the format listed on
http://surfer.nmr.mgh.harvard.edu/fswiki/LongitudinalProcessing
however it still does not seem to work.
Does anyone have any idea on what I need to do differently?
Thank You in advance for any suggestions you might have.
B.A.
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