tkmedit only displays volumes. Use tksurfer for surfaces, something like tksurfer 3t2234 lh inflated -overlay ./3t2234/label/15yr_lh_A1C_new2.mgh doug
Tina Jeon wrote: > Using tkmedit > > -----Original Message----- > From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu] > Sent: Monday, March 12, 2012 1:01 PM > To: Tina Jeon > Cc: Douglas N Greve; freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] mri_vol2surf > > how are you trying to display it? > On Mon, 12 Mar 2012, Tina Jeon wrote: > > >> I am still getting the same display error with using an mgh file. >> >> mri_vol2surf --src ./3t2234/label/15yr_lh_A1C_new.mgh --out_type mgh >> --out ./3t2234/label/15yr_lh_A1C_new2.mgh --regheader 3t2234 >> --projfrac-max 0 1 .1 --hemi lh >> >> Any suggestions? >> >> Thank you, >> >> Tina Jeon >> Graduate Student >> Advanced Imaging Research Center >> UT Southwestern Medical Center >> >> >> -----Original Message----- >> From: Douglas N Greve [mailto:gr...@nmr.mgh.harvard.edu] >> Sent: Thursday, March 08, 2012 2:01 PM >> To: Tina Jeon >> Cc: freesurfer@nmr.mgh.harvard.edu >> Subject: Re: [Freesurfer] mri_vol2surf >> >> Hi Tina, the problem may be with using nifti. Try an mgh file. Also, >> you'll probably want to use --projfrac-max 0 1 .1 doug >> >> Tina Jeon wrote: >> >>> Hi Freesurfers, >>> >>> >>> >>> I am trying to use projfrac 1 to threshold my newly created cortical >>> label to include the entire cortical ribbon since only a small number >>> of voxels are being included in my manual tracings. >>> >>> >>> >>> My input code is: >>> >>> mri_vol2surf --src ./3t2234/label/15yr_lh_A1C_fs.nii.gz --out_type >>> nifti --out ./3t2234/label/15yr_lh_A1C_new.nii.gz --regheader 3t2234 >>> --projfrac 1 --hemi lh >>> >>> >>> >>> I open the newly created surface with tkmedit and I get a display >>> error (see below). Does anyone have any suggestions on how to absolve >>> the issue? >>> >>> >>> >>> Thanks all help appreciated, >>> >>> >>> >>> Tina Jeon >>> >>> Graduate Student >>> >>> Advanced Imaging Research Center >>> >>> UT Southwestern Medical Center >>> >>> >>> >>> Error accessing display. >>> >>> Error accessing display. >>> >>> while executing >>> >>> "SetSlice $gnVolSlice [set gnVolSlice]" >>> >>> invoked from within >>> >>> ".w.fwToolBar.fwNavBar.fwCurSlice.bwInc invoke" >>> >>> ("uplevel" body line 1) >>> >>> invoked from within >>> >>> "uplevel #0 [list $w invoke]" >>> >>> (procedure "tk::ButtonUp" line 22) >>> >>> invoked from within >>> >>> "tk::ButtonUp .w.fwToolBar.fwNavBar.fwCurSlice.bwInc" >>> >>> (command bound to event) >>> >>> >>> >>> >>> --------------------------------------------------------------------- >>> - >>> -- >>> >>> UT Southwestern Medical Center >>> The future of medicine, today. >>> --------------------------------------------------------------------- >>> - >>> -- >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail contains patient information, please contact the Partners Compliance >> HelpLine at http://www.partners.org/complianceline . If the e-mail was sent >> to you in error but does not contain patient information, please contact the >> sender and properly dispose of the e-mail. >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> >> > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
