Doug, Attached are the aseg.stat files of the two different runs (AA262.G1 and AB054.G1) where I got the error message. Thanks Rashmi.
On 5/16/12 11:41 AM, "Douglas N Greve" <gr...@nmr.mgh.harvard.edu> wrote: >Can you send me /opt/freesurfer/subjects/AA262.G1/stats/aseg.stats? >Also, please remember to copy the list so that others can see the answer >and so that others can help with the answer. >thanks! >doug > >On 05/16/2012 11:56 AM, Rashmi Singh wrote: >> >> Dough, >> >> Yes, the stat files exist with all its content. I can individually >> import the text aseg files into xcell sheet, but I have 44 data >> files, so I was trying asegstat2table option. >> What do you think may be going wrong. The output file says that recon >> all completed without error for all my subject files. >> >> Thanks, >> Rashmi. >> >> >> >> >> Do those files exist? Do they have content in them? >> doug >> >> On 05/15/2012 05:51 PM, Rashmi Singh wrote: >> >> Hello, >> I am trying to get the asegmentation information after the >>recon-all >> run in the table form, but I am continuously getting the following >> error >> >> asegstats2table --subjects AA262.G1 AA267.G2 AA304.G1 --meas volume >> --tablefile asegstats.txt >> SUBJECTS_DIR : /opt/freesurfer/subjects >> Parsing the .stats files >> ERROR: The stats file >> /opt/freesurfer/subjects/AA262.G1/stats/aseg.stats is not found or >>is >> too small to be a valid statsfile >> Use --skip flag to automatically skip bad stats files >> >> I did try to use the skip option , but then , it skips all the files >> giving the same error. >> When I individually open the aseg files from the stats folder, those >> look fine to me. >> >> Please advise. >> >> Rashmi. >> >> >> ------------------------------------------------------------------------ >> >> This document may contain information covered under the Privacy Act, 5 >> USC 552(a), and/or the Health Insurance Portability and Accountability >> Act (PL 104-191) and its various implementing regulations and must be >> protected in accordance with those provisions. Healthcare information >> is personal and sensitive and must be treated accordingly. If this >> correspondence contains healthcare information it is being provided to >> you after appropriate authorization from the patient or under >> circumstances that don't require patient authorization. You, the >> recipient, are obligated to maintain it in a safe, secure and >> confidential manner. Redisclosure without additional patient consent >> or as permitted by law is prohibited. Unauthorized redisclosure or >> failure to maintain confidentiality subjects you to application of >> appropriate sanction. If you have received this correspondence in >> error, please notify the sender at once and destroy any copies you >> have made. > >-- >Douglas N. Greve, Ph.D. >MGH-NMR Center >gr...@nmr.mgh.harvard.edu >Phone Number: 617-724-2358 >Fax: 617-726-7422 > >Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > > >The information in this e-mail is intended only for the person to whom it >is >addressed. If you believe this e-mail was sent to you in error and the >e-mail >contains patient information, please contact the Partners Compliance >HelpLine at >http://www.partners.org/complianceline . If the e-mail was sent to you in >error >but does not contain patient information, please contact the sender and >properly >dispose of the e-mail. > ________________________________ This document may contain information covered under the Privacy Act, 5 USC 552(a), and/or the Health Insurance Portability and Accountability Act (PL 104-191) and its various implementing regulations and must be protected in accordance with those provisions. Healthcare information is personal and sensitive and must be treated accordingly. If this correspondence contains healthcare information it is being provided to you after appropriate authorization from the patient or under circumstances that don't require patient authorization. You, the recipient, are obligated to maintain it in a safe, secure and confidential manner. Redisclosure without additional patient consent or as permitted by law is prohibited. Unauthorized redisclosure or failure to maintain confidentiality subjects you to application of appropriate sanction. If you have received this correspondence in error, please notify the sender at once and destroy any copies you have made.
aseg.stats
Description: aseg.stats
aseg.stats
Description: aseg.stats
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