Dear all, I'm new to freesurfer and I'm trying to move a set of parcels from mni space to the native space of a subject. The parcels were created in SPM but I was going to try to register them to the subject using cvs. I registered my subject to an mni template with cvs. I converted the .img parcel file to .nii.gz, and changed the voxel size and orientation to match the mni template I used for the cvs registration of my subject. I then run this:
mri_vol2vol --inv-morph --noDefM3zPath --interp nearest --no-save-reg --mov ' subj_anat_vol ' --targ ' cvs_input ' --o ' in_anat_output ' --m3z ' morph_fullpath ' >> ' log_fullpath where cvs_input is my parcel. When I run it, the parcels don't register well and come out distorted/in the wrong spot/etc. The parcel volume size is very different from the 256x256x256 template, but I don't know how to handle this problem. Any help you can give is greatly appreciated! Thanks! Terri
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.