On 11/21/2012 05:48 AM, Gabriel Gonzalez Escamilla wrote: > Dear Doug > > I'm looking for making the interhemispheric registration procedure of > FS, I was just gertting familiar with it by reading the: > http://surfer.nmr.mgh.harvard.edu/fswiki/Xhemi > I found that in the step "# Correct for MC" say that this need a new > version of mri_glmfit-sim, is this version somehow available now? or > it does refeer to the FS v5.1 version? Actually, you don't need the new version anymore. Just run it without the "--subject-override fsaverage" argument. I'll change it on the wiki. > > I have two doubs about the whole procedure: > which are the main differences between using the FS average and > creating my own average? Your own atlas might allow for a better fit to the data. > and second: if I decide to create my own atlas, after all the 1.3 > procedure, should I then run the 1.2 steps subtituing the > FSaverage_sym for mine? Yes. I would try it with the default fsaverage_sym. I had to go through 35 iterations to make sure fsaverage_sym was really symmetrical. This takes a very long time, so if your results are satisfactory with fsaverage_sym, I would use that. doug > > Many thanks in advanced, > Gabriel
-- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
