Hi Sinead, sure, just give recon-all the .nii as input with -i instead of the dicoms and you should be all set.
cheers Bruce On Wed, 16 Jan 2013, Sinead Kelly wrote: > Dear members, > > I am new to Freesurfer and to cortical thickness analysis so I would > like to ask a very basic question that I cannot find the answer to > online - is it possible to conduct cortical thickness analysis using > T1 files in *.nii format? > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
