Hi Stefano - The argument of the -c option is a configuration file, not a directory. For more info on trac-all and setting up the configuration file, please see the trac-all wiki page:
http://www.freesurfer.net/fswiki/trac-all and tracula tutorials: http://www.freesurfer.net/fswiki/FsTutorial/Tracula
a.y On Mon, 28 Jan 2013, std...@virgilio.it wrote:
Hi and thank you very much for your availability. Now, I'm running tracula as following: trac-all -prep -c /Applications/freesurfer/subjects/subject_prova/CON_01 my CON_01 forder contains: data.nii.gz (DWI), bvals and bvecs (as used in > previous FSL analysis) and T1-images.nii.gz. File.niii.gz are the same that I have previously used in FSL analysis. Please, my questions are: a- Are correct the command and the files (dyrectory positioning and their extensions)? b- Now my computer seem to running but after 1 h from the start, I visualize on my desktop this message "Your Mac 0SX has no more space available for application memory". My pc is a iMAC OS X Mountain Lion. 2.7 GHz Intel Core i5; 8GB 1600 MHz DDR3; NVIDIA GeForce DT640M 512 MB; 762,42 GB are free on a total of 999,35 I have download the package for (Snow)Leopard (10.5/6.x) Intel. Thanks, Stefano ----Messaggio originale---- Da: ayend...@nmr.mgh.harvard.edu Data: 27-gen-2013 19.36 A: <std...@virgilio.it> Cc: <freesurfer@nmr.mgh.harvard.edu> Ogg: Re: [Freesurfer] TRACULA Hi Stefano - The -prep option doesn't take an argument. Please run trac-all with no arguments to see usage info. a.y > Hi list, > I'm trying to run a test subject with TRACULA. > I placed a folder in /Applications/freesurfer/subject/subject_prova which > contains these files: data.nii.gz (DWI), bvals and bvecs (as used in > previous FSL analysis) and T1-images.in > /Applications/freesurfer/subject/subject_prova > This is the command that I'm running:[iMac-di-Stefano:~] Stefano% trac-all > -prep $FREESURFER_HOME/subjects/subject_prova/CON_01 --i > $FREESURFER_HOME/subjects/subject_prova > ERROR: flag > /Applications/freesurfer/subjects/subject_prova/CON_01unrecognized-prep > /Applications/freesurfer/subjects/subject_prova/CON_01 --i > /Applications/freesurfer/subjects/subject_prova > Please, give me an help. > > Thanks in advance, > > Stefano _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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