Hi Shani, what is fs_read_dat.m? I've never seen it before. Why do you need to transform the surface? What are you using to create the display below (ie, command line)? doug
On 01/31/2013 10:53 AM, Shani Ben Amitay wrote: > Dear freesurfers > I used bbregister to coregister diffusion images with anatomical. > I would like to apply the bbregistration transformation to the white > and pial surfaces > What I've done is: > I calculated new transformation matrix using fs_read_dat.m and then > apply it to the surfaces with mri_surf2surf. > When overlaying the new surface on the diffusion data- it seems that > the transformation is inaccurate.(screenshot is attached) > Any idea why?. > > Thanks, Shani > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
