Hi, In FreeSurferColorLUT.txt (Freesurfer 5.1), there is a label for the inferior colliculus (7100), but this structure seems only to be labeled collectively with other brainstem structures (16) in aparc.a2009s+aseg. It appears from posts in the mail list that only a subset of the labels in FreeSurferColorLUT.txt make it into the automatic segmentation done by recon-all.
Any suggestions of how I could access lh and rh inferior colliculus labels for fsaverage, and then morph them to each subject's norm.mgz? Thanks, Susan McLaughlin SPACE Lab (Stimulus-Parametric Imaging of Auditory Cortex) Dept. of Speech and Hearing Sciences University of Washington _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
