which version of CentOS? Also, can you send me the result of cat $FREESURFER_HOME/build-stamp.txt
On 03/21/2013 02:09 PM, Y.V. Jiang wrote: > Hi Doug, > > I am using Linux: x86_64 GNU/Linux. Thanks. > > -Yuhong > > On Thu, Mar 21, 2013 at 12:57 PM, Douglas N Greve > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote: > > what platform are you using? > > > On 03/21/2013 01:24 PM, Y.V. Jiang wrote: > > Hi Doug, > > Thanks for the reply. From the command line the command > 3dvolreg.afni returned the following error: > > 3dvolreg.afni: symbol lookup error: 3dvolreg.afni: undefined > symbol: afni_ncerr > > -Yuhong > > On Thu, Mar 21, 2013 at 12:08 PM, Douglas N Greve > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>>> wrote: > > > Hi Yuhong, > What happens when you run 3dvolreg.afni from the command > line without > any args? > doug > > On 03/21/2013 12:38 PM, Y.V. Jiang wrote: > > Hi Doug, > > > > I was running preproc-sess in the newly released > freesurfer-5.2.0. The > > command I used was: > > > > preproc-sess -sf sessid -df sessdir -fsd bold -surface > fsaverage lhr > > -mni305 -fwhm 6 -per-run > > > > The program failed with the following errors: > > > > 3dvolreg.afni -verbose -dfile 004/fmcpr.mcdat -1Dmatrix_save > > 004/fmcpr.mat -base > 004/tmp.mc-afni2.29239/tempvol.nii.gz -prefix > > 004/tmp.mc-afni2.29239/outvol.nii.gz > 004/tmp.mc-afni2.29239/invol.nii.gz > > 3dvolreg.afni: symbol lookup error: 3dvolreg.afni: > undefined symbol: > > afni_ncerr > > ERROR: 3dvolreg.afni > > Invalid null command. > > > > I have the file 3dvolreg.afni in $FREESURFER_HOME/bin. > There is > > another file of the same name under afni/bin. > Preproc-sess is > relying > > on the version in $FREESURFER_HOME/bin. > > > > Do you know what the problem is? Should I replace > freesurfer's > copy of > > 3dvolreg.afni with AFNI's copy of 3dvolreg.afni? > > > > Thanks. > > > > -Yuhong > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu>> > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>> > Phone Number: 617-724-2358 <tel:617-724-2358> > <tel:617-724-2358 <tel:617-724-2358>> > Fax: 617-726-7422 <tel:617-726-7422> <tel:617-726-7422 > <tel:617-726-7422>> > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop: > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > > Outgoing: > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu>> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the > person to > whom it is > addressed. If you believe this e-mail was sent to you in > error and > the e-mail > contains patient information, please contact the Partners > Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to > you in error > but does not contain patient information, please contact the > sender and properly > dispose of the e-mail. > > > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > Phone Number: 617-724-2358 <tel:617-724-2358> > Fax: 617-726-7422 <tel:617-726-7422> > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > Outgoing: > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
