Hi Valeria what version are you running? It's hard to tell from a single slice, but what is the white-matter appearing stuff that is outside the white matter surface? I think that is what's messing stuff up. If you want to upload the data subject one of us will take a look (that is, upload the entire subject directory)
cheers Bruce On Mon, 6 May 2013, Contarino Valeria wrote: > > Dear Freesurfers, > > I usually get very satisfying results but in my last analysis I noticed some > errors in a few subjects' pial > surface (see attached example image). I really don't get how it failed in > that way. > What I know I can surely do is to manually modify the WM and run again the > autorecon command. > > Could someone kindly advice me on how to avoid/solve the problem in a less > time-consuming way? > Thank you. > > Regards, > > Valeria Elisa Contarino, MEng > Neuroradiology Department > IRCCS Foundation Neurological Institute "C.Besta" > Via Celoria 11, > 20133 Milano, Italy > ph: +39 02 23942472 > > > > > > > > > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
