I guess you'll need to run a set of individual steps in recon-all, and
probably need to edit the file to disable e.g. talairach and aseg
On Wed, 8
May 2013, Shani Ben Amitay wrote:
Ok-will tryAny idea how can I avoid steps like aligning to atlas when running
specific steps of the
streamline?
On Wed, May 8, 2013 at 4:24 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote:
oh, that's going to be tough. I guess you could extract the WM and use it
to create our wm.mgz and
go from there
On Wed, 8 May 2013, Shani Ben Amitay wrote:
Segmentation into white matter gray matter and CSF of a rat brainCan you
give me brief
directions-where to
start from?
Thanks!
Shani
On Wed, May 8, 2013 at 3:46 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>
wrote:
Hi Shani
what kind of segmentation? In general yes, but you'll need to mess
with the recon-all
script
cheers
Bruce
On Wed, 8 May 2013, Shani Ben Amitay wrote:
Hello Freesurfer
I would like to extract the stream for surface-based analysis
on the output of an
in-house segmentation
process.Is this possible?How?
Thanks
Shani
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