I actually didn't change any of the parameters for this patient- not the dicoms
or headers, just put the dicoms as they were through the freesurfer stream. I
can send you all the possible sequences I could have used from the MR? I think
that this was an mprage, so I thought it would work.
Thanks so much,
Mia
________________________________________
From: Nick Schmansky [ni...@nmr.mgh.harvard.edu]
Sent: Tuesday, May 14, 2013 4:57 PM
To: Borzello, Mia
Cc: freesurfer
Subject: Re: [Freesurfer] Recon-all error
Mia,
Hi, in looking at the mri/orig/001.mgz, the image in the sagital and
coronal planes look inverted. also, i noticed this mri_info:
dimensions: 566 x 256 x 992
voxel sizes: 1.0000, 1.0000, 1.0000
which seems like unusual input. how was this converted from the dicom?
did it necessitate altering the header?
Nick
On Tue, 2013-05-14 at 20:23 +0000, Borzello, Mia wrote:
> Hi freesurfers,
>
>
>
> I recently ran a reconstruction, but it's errored. I'm not sure why
> thought, but I've attached the recon log.
>
>
>
> Thanks,
>
> Mia
>
>
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