Hi Bruce,
So technically speaking I guess I have three different brain
atlases for neonates, 1 yr olds, and 2 yr olds. Each atlas contains a set
of 3D images made up of the intensity model, tissue probability maps, and
anatomical parcellation map. I obtained these from a study done by UNC (
http://bric.unc.edu/ideagroup/free-softwares/unc-infant-0-1-2-atlases/
<http://bric.unc.edu/ideagroup/free-softwares/unc-infant-0-1-2-atlases/>
).
I also have about 40 different infant fMRI's that I would like to
reconstruct and analyze with FreeSurfer. However, I believe that the
default template (average.curvature.filled.buckner40.tif) will not work for
these infant brains. My end goal is to be able to convert the provided
brain atlases (from UNC) into a format that can be used for a template in
FreeSurfer (i.e. TIFF image).
Is there any clear cut way to do that?
Thanks for the help.
- Mark
On Mon, Jun 24, 2013 at 3:02 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>wrote:
> Hi Mark
>
> can you clarify what you mean? What template are you referring to?
>
> Bruec
>
> On Mon, 24 Jun 2013, Mark Plantz wrote:
>
> Hello freesurfers,
>> I am currently attempting to create my own .tiff templates for a
>> series of infant fMRI's (neonates, 1 yr olds, and 2 yr olds). I currently
>> have the templates in .nii.gz, .mgz, and .img/.hdr formats.
>>
>> Is there any easy way to convert from one of these formats to a .tiff
>> image
>> to use as an actual template for reconstruction with FreeSurfer?
>>
>> If so, would the conversion distort/ruin the template?
>>
>> Thank you!
>>
>>
>> - Mark Plantz
>>
>>
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