if there are both use -autorecon2-wm -autorecon3. There is also the
option of adding control points and running -autorecon2-cp -autorecon3
cheers
Bruce
On
Thu, 1 Aug 2013, Stéphane Poulin wrote:
Dear Freesurfer experts,
Regarding recon-all troubleshooting, my understanding is that you can edit wm
and complete the pipeline with recon-all –autorecon2-wm. Similarly you can
complete the pipeline with recon-all –autorecon2-pial if there is a problem
with the pial surface.
If there are both white matter and pial surface edits, is there an “efficient”
way to correct for both and complete the pipeline.
Thanks,
Stephane
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