I think you need to use mri_cor2label (not very well named:)
doug
On 10/16/13 4:24 PM, Marcos Martins da Silva wrote:
Hi, Freesurfers.
I need to create some labels from binary masks. Sometime ago I read a
post
(https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2013-October/033783.html
) and, unless I am wrong, it seemed to me that mri_label2vol could be
the tool to get it. If so, could you please explain how? I read
documentation on wiki and help from the command itself and could not
see how to accomplish that. I could only find how to create a volume
from a label. What I need to do is to get a mask like the
binLeftHippoHead.mgz (attached) and create a label. Assuming it is
possible, I could also make labels for Hippocampal body and head,
merge the 3 labels into an annot file. This way i can use Freeview to
load the whole hippocampal surface and discriminate the 3 segments by
colors with the annot file.
Thanks in advance for any help.
Cheers,
Marcos.
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