Hi Linda try using the expert options to specify the gray and white matter intensity ranges
cheers Bruce On Mon, 4 Nov 2013, Linda Zhang wrote: > Dear all, > > A few of my subjects end up with surfaces where the white matter > surface is actually the pial surface, probably due to less than ideal > contrast between the wm and cortical gm. The aseg seems to do a > better job though. I've attached a few images to demonstrate what I > mean. What's the best method to correct this? I'm running FS 5.1 > with the -nuintensitycor-3T flag for recon-all. > > Cheers, > Linda > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
