Hello, I plan on using the aseg.nii to create a grey matter mask. I want to warp these grey matter masks to MNI space. I have been trying to use @auto_tlrc in AFNI to do this warping but am having some trouble.
The reason I need this in MNI space is because I plan to make a group grey matter mask that I use to restrict my funtional fmri data analysis, which is in MNI space (MNI_avg_152T1). How might I go about doing the warping and I wanted to double check the order of doing things? Should I create the grey matter masks first then warp to MNI? Or do I warp the aseg files to MNI and then create the grey matter masks? Thanks so much! Emily _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
