Great thanks! I'll try that. I've also figured out that I can just add the subjects into the brackets that say subject list. But I'll try your method just in case I'm wrong. Thanks again!
On Tue, Dec 3, 2013 at 11:26 PM, Douglas Greve <gr...@nmr.mgh.harvard.edu>wrote: > > On 12/3/13 11:08 PM, krista kelly wrote: > > Great thanks Douglas! I'm glad that this is available, I wasn't too keen > on using the 'flip the brain' method of looking for hemisphere asymmetries. > > Just a few questions regarding the first step - Apply an existing atlas > (fsaverage_sym); this looks like a "for" loop, which I'm not great at > figuring out. I would like to know how to actually do this. > > It seems like I would need to give it a list of all my subjects so that > it can go through each subject separately without me having to run each > participant separately. Is that correct? If so, and I have 40 participants, > I'll need to leave the computer for a few days to do this. Is that correct? > > Yes. > > > Lastly, how do I create the subject list? I tried just creating a list > of my subjects using text mate and keeping it in the subjects folder, then > using that in place of (subject list). This didn't work. > > You're half way there, just > set subjectlist = `cat subjectlistfile` > where subjectlistfile is the file that you created (which can be called > anything) > doug > > > > > Thanks again! > > > On Sat, Nov 30, 2013 at 2:34 PM, Douglas Greve > <gr...@nmr.mgh.harvard.edu>wrote: > >> >> yep, we have an existing stream complete with documentation and a >> publication you can cite! >> http://surfer.nmr.mgh.harvard.edu/fswiki/Xhemi >> >> >> >> On 11/30/13 12:59 PM, krista kelly wrote: >> >> Hello, >> >> I need to do a within group hemisphere comparison to see if there are >> any hemisphere asymmetries in a patient group. I would like to do this in >> QDec or if possible, somehow do it in freesurfer without using Qdec. I >> asked this question two years ago and you mentioned that you were working >> on this and it should be available soon. Has there been any progress? >> >> Thanks! >> Krista >> >> >> _______________________________________________ >> Freesurfer mailing >> listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> > >
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