Dear all，
When I run "recon-all -s ${subject} -localGI", it appear "rm: remove
regular file `/tmp/tmp4653077.mgh'? ". Then, I write yes, however, it
didn't response anyway. How shold I do next? Thank you!
The echo for the process is followed
--------------------------
running subject Emotion_xunlian_s12002
--------------------------
Subject Stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0
Current Stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0
INFO: SUBJECTS_DIR is /home/fmri/desktop/test
Actual FREESURFER_HOME /usr/local/freesurfer
-rw-rw-r--. 1 root root 544815 Dec 6 20:54 /home/fmri/desktop/test/
Emotion_xunlian_s12002/scripts/recon-all.log
Linux localhost.localdomain 2.6.32-358.23.2.el6.x86_64 #1 SMP Wed Oct 16
18:37:12 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
/home/fmri/desktop/test/Emotion_xunlian_s12002/surf
#--------------------------------------------
#@# Local Gyrification Index lh Fri Dec 6 21:07:40 CST 2013
mris_compute_lgi --i lh.pial
=================
rm -Rf /home/fmri/desktop/test/Emotion_xunlian_s12002/surf/
tmp-mris_compute_lgi-lh.pial
=================
=================
mkdir -p /home/fmri/desktop/test/Emotion_xunlian_s12002/surf/
tmp-mris_compute_lgi-lh.pial
=================
=================
mris_fill -c -r 1 lh.pial /home/fmri/desktop/test/
Emotion_xunlian_s12002/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz
=================
reading surface from lh.pial...
writing filled volume to /home/fmri/desktop/test/
Emotion_xunlian_s12002/surf/tmp-mris_compute_lgi-lh.pial/
lh.pial.filled.mgz...
conforming output volume
setting resolution for intermediate calculations to 1.0000
=================
make_outer_surface('/home/fmri/desktop/test/Emotion_
xunlian_s12002/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.
filled.mgz',15,'/home/fmri/desktop/test/Emotion_xunlian_
s12002/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer'); exit
=================
Warning: Unable to open display 'iconic'. You will not be able to display
graphics on the screen.
< M A T L A B (R) >
Copyright 1984-2012 The MathWorks, Inc.
R2012a (7.14.0.739) 64-bit (glnxa64)
February 9, 2012
Toolbox Path Cache read in 0.02 seconds.
MATLAB Path initialized in 0.79 seconds.
To get started, type one of these: helpwin, helpdesk, or demo.
For product information, visit www.mathworks.com.
>> reading filled volume...
-------- freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 --------
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /usr/local/freesurfer
FSFAST_HOME /usr/local/freesurfer/fsfast
FSF_OUTPUT_FORMAT nii.gz
SUBJECTS_DIR /home/fmri/desktop/test
MNI_DIR /usr/local/freesurfer/mni
FSL_DIR /opt/fsl
-------- freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 --------
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /usr/local/freesurfer
FSFAST_HOME /usr/local/freesurfer/fsfast
FSF_OUTPUT_FORMAT nii.gz
SUBJECTS_DIR /home/fmri/desktop/test
MNI_DIR /usr/local/freesurfer/mni
FSL_DIR /opt/fsl
rm: remove regular file `/tmp/tmp4653077.mgh'?
--
kangcheng Wang
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
