sorry, looking at the script, I think: recon-all -autorecon-pial -s <subject name>
should be all you need, but perhaps someone else can confirm. Bruce On Tue, 10 Dec 2013, Rujing Zha wrote:
Dear Bruce, In PialEdit_tktools http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/PialEdits_tktools, it say this: recon-all -autorecon-pial -subjid pial_edits_before .So I didnot know whether the "-autorecon-pial" option "-autorecon2-pial" option I can run. Would you please tell me which one I should use? Thanks. All the best. 2013-12-10 ____________________________________________________________________________ Rujing Zha ____________________________________________________________________________ 发件人：Bruce Fischl <fis...@nmr.mgh.harvard.edu> 发送时间：2013-12-10 21:17 主题：Re: [Freesurfer] after PialEdit_tktools 收件人："Rujing Zha"<zh...@mail.ustc.edu.cn> 抄送："freesurfer"<freesurfer@nmr.mgh.harvard.edu> Hi Rujing, yes, you should run -autorecon2-pial -autorecon3 cheers Bruce On Tue, 10 Dec 2013, Rujing Zha wrote: > Dear all, > I run "recon-all -autorecon-pial -s subjects" after editing the pial by > PialEdit_tktools. However I only find "-autorecon2-pial" option in recon- all > manual. So I donot know whether I should run the "recon-all -s subjects > -autorecon3" to complete all the 31 stages? > Thanks. > All the best. > > 2013-12-10 > > _________________________________________________________________________ ___ > Rujing Zha > School of Life Science > > University of Science and Technology of China > > E-mail: > > zh...@mail.ustc.edu.cn > > charuj...@gmail.com > > charujing...@163.com > > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it i s addressed. If you believe this e-mail was sent to you in error and the e-ma il contains patient information, please contact the Partners Compliance HelpLi ne at http://www.partners.org/complianceline . If the e-mail was sent to you in e rror but does not contain patient information, please contact the sender and pro perly dispose of the e-mail.
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