Dear experts, To complete my error, I've got moreover another error in "dmri.bedpostX/logs" for each slice :
*** ERROR (nifti_image_read): failed to find header file for '/home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/data_slice_0000'* *** ERROR: nifti_image_open(/home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/data_slice_0000): bad header info* *Error: failed to open file /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/data_slice_0000* *ERROR: Could not open image /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/data_slice_0000* *Image Exception : #22 :: Failed to read volume /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/data_slice_0000* *An exception has been thrown* *Failed to read volume /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/data_slice_0000Trace: read_volume4DROI.* Thanks for helping ! Matthieu 2013/12/12 Matthieu Vanhoutte <matthieuvanhou...@gmail.com> > Hello experts, > > > I am running the ball-and-stick model fit in Tracula on FS 5.1 and come > across the error: > > > *WARN: Running FSL's bedbost locally - this might take a while > WARN: It is recommended to run this step on a cluster > bedpostx_seychelles /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri > subjectdir is /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri > Making bedpostx directory structure > Queuing preprocessing stages > /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 216: [: SGE: unexpected > operator > /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 263: [: SGE: unexpected > operator > /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 321: [: xbedpostx_pre: > unexpected operator > /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 351: [: x: unexpected > operator > Queuing parallel processing stage > /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 216: [: SGE: unexpected > operator > /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 321: [: xbedpostx: > unexpected operator > /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 351: [: x66: unexpected > operator > Queuing post processing stage > /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 216: [: SGE: unexpected > operator > /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 263: [: SGE: unexpected > operator > /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 321: [: xbedpostx_post: > unexpected operator > /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 351: [: x: unexpected > operator > > Type /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri.bedpostX/monitor to show > progress. > Type /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri.bedpostX/cancel to > terminate all the queued tasks. > > You will get an email at the end of the post-processing stage. > * > > I have attached my dmrirc file and trac-all.log. > > Best regards, > > Matthieu > >
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